Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67580 863 / 0 CDKG;2 Protein kinase superfamily protein (.1.2) AT5G63370 501 / 5e-171 CDKG;1 Protein kinase superfamily protein (.1.2.3.4) AT5G64960 302 / 1e-93 CDKC2, CDKC;2 Cyclin-dependent kinase C;2, cyclin dependent kinase group C2 (.1.2) AT5G10270 300 / 5e-93 CDKC;1 cyclin-dependent kinase C;1 (.1) AT1G20930 284 / 2e-89 CDKB2;2 cyclin-dependent kinase B2;2 (.1) AT3G48750 282 / 7e-89 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT1G76540 271 / 2e-84 CDKB2;1 cyclin-dependent kinase B2;1 (.1) AT1G18040 265 / 4e-81 CDKD1;3, AT;CDCKD;3, CAK2AT cyclin-dependent kinase D1;3 (.1) AT1G73690 261 / 1e-79 CDKD1;1, AT;CDKD;1, CAK3AT cyclin-dependent kinase D1;1 (.1) AT1G66750 258 / 5e-79 CDKD1;2, CAK4AT, AT;CDKD;2, CDKD;2 CYCLIN-DEPENDENT KINASE D1;2, CDK-activating kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G178200 [exp] 1153 / 0 AT1G67580 858 / 0.0 Protein kinase superfamily protein (.1.2) Potri.015G092100 [exp] 597 / 0 AT1G67580 588 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G094600 [exp] 593 / 0 AT1G67580 574 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G024600 [exp] 301 / 2e-93 AT5G10270 712 / 0.0 cyclin-dependent kinase C;1 (.1) Potri.004G133500 [exp] 288 / 2e-91 AT3G48750 540 / 0.0 cell division control 2 (.1) Potri.012G003700 [exp] 286 / 2e-87 AT5G10270 661 / 0.0 cyclin-dependent kinase C;1 (.1) Potri.002G003400 [exp] 270 / 8e-84 AT1G76540 553 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.005G257500 [exp] 265 / 2e-82 AT1G76540 552 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.012G103900 [exp] 270 / 9e-81 AT5G50860 709 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015816 [exp] 955 / 0 AT1G67580 892 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036995 [exp] 951 / 0 AT1G67580 897 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036106 [exp] 305 / 6e-95 AT5G10270 689 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10026790 [exp] 302 / 8e-94 AT5G10270 675 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10022043 [exp] 303 / 3e-89 AT5G10270 710 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10042588 [exp] 268 / 2e-80 AT5G10270 712 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10035892 [exp] 268 / 4e-80 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10040593 [exp] 259 / 6e-80 AT1G76540 534 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10038755 [exp] 255 / 4e-79 AT3G48750 468 / 7e-169 cell division control 2 (.1) Lus10025773 [exp] 267 / 2e-78 AT1G53050 939 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.010G056900.4 pacid=42797873 polypeptide=Potri.010G056900.4.p locus=Potri.010G056900 ID=Potri.010G056900.4.v4.1 annot-version=v4.1 ATGGCCGCTGGGAGACACGGGGGTTATCACGATAATGAATTCAAGGACCAGGAGTCTGATTTTGAACTATTAAAAGAGGATTTTGCTTATTCCAAGGATC AATATGATAGAATTGGGAATGGTAATGCTGAAAATGATAGGGGTCAAGTTCATCACTTAAGAGATAGTGCTAGGGTTAGGCAGAAGGATATTAAGGAGAC GGGCGTGACTAATGGTGGGTATCGGTCCTCTTCCAGCAGGAGTGATTCAGGAAGTAGTGGTGGTGGTGGTGCCCTAAGGTCACGGAGGTGTGGGTTTTCT GTCAGGGCCACTGATAAGGAGCCAGGTGAGTTGTCCAGTGAGAGTGGGTCTGATGATGCCATTGACCCTGAGTCACATGCTCATAAAGGTAGTGAGGTTT TGAAAGTAACACCAGTGGAGAAGAAGAGGAAGTTTTCTCCTGTAGTTTGGGATAGAGATGATAAAGCTACCAGTAGCTTATCAAAAAGTTGGAGTTCCCC TGCAGCGGCCGCTCTCCCTCCACCGCCACCCCTGCCTAAGGCATACCGCCAGTCACCTAATGTTATTCCAGATGGAGGTGTAGAGATTTCTCCTGTTATA AGCAGTAAAAACCTGACTCTGCAGTCTTCTTCACCACTGAAGGGTTCGGTGGTTAAAGGGTCTGCTGGCAATTCTGCATCTAACTCTCCAGTAGAGTTGG CTTTCTCGCTGAAGGGTTCGGTGGTTAAAGGGTCAGTTGGCAATTCTGCACCTGAGTCTTCGATAGAGTTGGCTTCCTCACCAGTGGAGGAGCAATGGGG TAATGACCAGGAAGCACAGCACATAGAAGATGAAGATTATGCTCCAATGAGGAATATATCATCTTCACGATGGGCAGATGGGAACAATTCTCCTGTTGAT GAGGGTGAAATTGTGGAGGATCAAGAAGTTCCTAAAAGGAGGAAGAAGATGCCTCATTTGGAGTCCTTGGATTTCAGAGTTCGCAACAAGTCATCGACGC CTGATCCGGGGGATCTTAGAAGAGAAGGATCTGACGCAGCTAGAGGGAGGTCATCTGAATCTGATGAGCGAGGCACCTGTGCTAGGTCTTCAAGTGGGGA TGATCATCCTGGTAATGATTCTGGGAGGGATGACTACATGGAAATTGATGACGAACATGATAACAATGATTCTGATACAGATCCTGAGGATGAAGATGAA AATGATTCGCATGAAACACCAGAACCTGCTGGTCCACCTCAAAGAAGTATAAACATGCTTCAGGGATGTAGAAGTGTTGATGAGTTTGAGAGATTGAATA AAATAGATGAAGGCACTTACGGTGTTGTATATAGAGCTAGGGACAAGAAAACTGGGGAAATTGTAGCACTGAAGAAGGTAAAGATGGAGAAAGAACGGGA AGGTTTTCCACTGACTTCTCTCAGGGAAATAAACATTCTTCTTTCTTTTCATCATCCGTCAATTGTTGATGTTAAAGAAGTTGTGGTAGGGAGTAACCTT GATAGCATTTTTATGGTGATGGAGTACATGGAACATGACCTTAAAGGACTCATGGAGTCTATGAGACAGCCATTTAGTCAGAGTGAGGTTAAATGCTTAA TGCTCCAGTTGTTGGAAGGTACGAAGTATCTTCATGATAATTGGGTGCTTCATCGAGATCTGAAGACATCAAATCTGCTTCTGAACAATCGTGGTGAGTT GAAGATCTGTGACTTTGGGTTGGCTCGTCAATATGGGAGCCCATTGAAACCGTATACTCATTTGGTAGTTACCCTGTGGTACAGGGCGCCAGAACTACTT TTGGGAGCCAAACAATATTCAACGGCAATTGACATGTGGTCACTTGGCTGCATTATGGCTGAATTGTTATCAAAGGACCCTCTGTTTAATGGCAAAACAG AAGTTGATCAACTTGACAAGATTTTCCGAATCCTTGGTACACCTAATGAGACAATCTGGCCTGGGTTTTCCAAGTTACCTGGAGTGAAGGTCAATTTTGT CAAGCAGCAGTATAACCTACTCCGTAAGAAATTTCCAGCAACATCCTTCACTGGATCACCGGTGCTTTCTGATTCTGGATTTGATTTGTTGAACAAGCTT CTAACCTATGACCCTGAGAAGCGGATTACTGCTGAAGCTGCTCTTAACCATGACTGGTTTCGTGAAGTTCCTCTTCCAAAGTCTAAAGATTTTATGCCTA CTTTTCCTGCTCAGCATGCTCAAGACAGGCGTCTCCGAAGAATGATGAAGAGTCCAGATCCTTTAGAAGAGCAGCGGAGAAAGGAGTTGCAACAAGGGGA GTTAGGGACTGGTGGTTTGTTTGGCTGA
AA sequence Show only first row Show all	>Potri.010G056900.4 pacid=42797873 polypeptide=Potri.010G056900.4.p locus=Potri.010G056900 ID=Potri.010G056900.4.v4.1 annot-version=v4.1 MAAGRHGGYHDNEFKDQESDFELLKEDFAYSKDQYDRIGNGNAENDRGQVHHLRDSARVRQKDIKETGVTNGGYRSSSSRSDSGSSGGGGALRSRRCGFS VRATDKEPGELSSESGSDDAIDPESHAHKGSEVLKVTPVEKKRKFSPVVWDRDDKATSSLSKSWSSPAAAALPPPPPLPKAYRQSPNVIPDGGVEISPVI SSKNLTLQSSSPLKGSVVKGSAGNSASNSPVELAFSLKGSVVKGSVGNSAPESSIELASSPVEEQWGNDQEAQHIEDEDYAPMRNISSSRWADGNNSPVD EGEIVEDQEVPKRRKKMPHLESLDFRVRNKSSTPDPGDLRREGSDAARGRSSESDERGTCARSSSGDDHPGNDSGRDDYMEIDDEHDNNDSDTDPEDEDE NDSHETPEPAGPPQRSINMLQGCRSVDEFERLNKIDEGTYGVVYRARDKKTGEIVALKKVKMEKEREGFPLTSLREINILLSFHHPSIVDVKEVVVGSNL DSIFMVMEYMEHDLKGLMESMRQPFSQSEVKCLMLQLLEGTKYLHDNWVLHRDLKTSNLLLNNRGELKICDFGLARQYGSPLKPYTHLVVTLWYRAPELL LGAKQYSTAIDMWSLGCIMAELLSKDPLFNGKTEVDQLDKIFRILGTPNETIWPGFSKLPGVKVNFVKQQYNLLRKKFPATSFTGSPVLSDSGFDLLNKL LTYDPEKRITAEAALNHDWFREVPLPKSKDFMPTFPAQHAQDRRLRRMMKSPDPLEEQRRKELQQGELGTGGLFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.010G056900 [exp]	0	1
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.008G178200 [exp]	1.00	0.9120
AT4G29940	HD	PRHA	pathogenesis related homeodoma...		Potri.006G075500 [exp]	2.82	0.8893
AT2G40770			zinc ion binding;DNA binding;h...		Potri.019G060900 [exp]	3.74	0.9087
AT2G24960			unknown protein		Potri.006G265900 [exp]	4.24	0.8687
AT1G60220		ULP1D, OTS1	OVERLY TOLERANT TO SALT 1, UB-...		Potri.010G040600 [exp]	4.24	0.8882
AT5G61990			Pentatricopeptide repeat (PPR)...		Potri.015G105400 [exp]	4.47	0.8964
AT3G45830			unknown protein		Potri.009G026100 [exp]	5.19	0.9077
AT3G04740		MED14, SWP, ATM...	STRUWWELPETER, ARABIDOPSIS MED...		Potri.013G041201 [exp]	6.00	0.8527
AT1G33050			unknown protein		Potri.001G452300 [exp]	6.40	0.8503
AT3G09360			Cyclin/Brf1-like TBP-binding p...		Potri.001G246100 [exp]	6.92	0.8800

Compare expression of checked genes

Potri.010G056900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.