Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Ptr4CL12
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63380 530 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G20510 444 / 4e-151 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT1G20480 442 / 6e-150 AMP-dependent synthetase and ligase family protein (.1) AT1G20500 424 / 3e-143 AMP-dependent synthetase and ligase family protein (.1) AT5G38120 412 / 3e-138 4CL8 AMP-dependent synthetase and ligase family protein (.1) AT4G05160 352 / 5e-115 AMP-dependent synthetase and ligase family protein (.1) AT4G19010 348 / 2e-113 AMP-dependent synthetase and ligase family protein (.1) AT3G21230 298 / 5e-94 4CL5 4-coumarate:CoA ligase 5 (.1) AT3G21240 296 / 3e-93 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT1G65060 284 / 1e-88 4CL3 4-coumarate:CoA ligase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G033600 [exp] 565 / 0 AT5G63380 598 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G094800 [exp] 522 / 0 AT5G63380 657 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.015G092300 [exp] 493 / 4e-170 AT5G63380 594 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G095000 [exp] 492 / 1e-169 AT5G63380 615 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G094900 [exp] 489 / 1e-168 AT5G63380 604 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.002G012800 [exp] 421 / 6e-142 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.005G248500 [exp] 417 / 3e-140 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.010G230200 [exp] 399 / 2e-133 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2) Potri.008G031500 [exp] 386 / 4e-128 AT1G20510 466 / 3e-159 OPC-8:0 CoA ligase1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036994 [exp] 630 / 0 AT5G63380 516 / 4e-179 AMP-dependent synthetase and ligase family protein (.1) Lus10002791 [exp] 480 / 9e-165 AT5G63380 688 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10015998 [exp] 410 / 4e-137 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10012280 [exp] 411 / 3e-135 AT1G20510 825 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10015999 [exp] 385 / 1e-127 AT1G20510 692 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10037934 [exp] 354 / 2e-115 AT1G20510 462 / 2e-157 OPC-8:0 CoA ligase1 (.1.2) Lus10038667 [exp] 353 / 5e-115 AT1G20510 449 / 1e-152 OPC-8:0 CoA ligase1 (.1.2) Lus10013831 [exp] 348 / 2e-113 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10021431 [exp] 338 / 9e-110 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10016135 [exp] 338 / 1e-109 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme CL0531 [poplar] [flax] AMP-binding_C PF13193 [poplar] [flax] AMP-binding_C AMP-binding enzyme C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.010G057000.1 pacid=42797965 polypeptide=Potri.010G057000.1.p locus=Potri.010G057000 ID=Potri.010G057000.1.v4.1 annot-version=v4.1 ATGGAGAATCAACCAGCAACGTTAATCGATCCAAAAAGCGGCTTCTGCTCAAAGACCAACACCTACCACTCCCTCAGACCTCACCTCGAACTCCCTCCGA TCACCACTCCTGTTTCCGCCACCGAATACGCCATCTCTCTCCTCCTATATTCCTCCCCTTCACCGCCACAAACCACCGCTCTCCTCGACGCTGTCACTGG CCGCCGCATTTCCTTCCCTGAACTCATTCACTTTACCGAAACCCTAGCCTCCTCTCTTCTCAACCGTTTTCGCCTCAAAAAAGGCGACACCGCTTTTATT CTCTCTCCAAACTCTATCCACATTCCGATCCTCTACCTCTCTCTCTTCTCTCTCGGCGTTGTTATCTCCCCTTCAAATCCGCTTTCCTCTGAACAGGAGA TTCTCCACCAAACCAACCTCTCTAAACCTGTCATCGCTTTTGTCACGTCACAGACTGCTCACAAAATCCCTTACTCGGTTAAGAAAACGATCCTCCTCGA CTCGCCAGAGTTTGAATCGCTTATGACGAGTCAGACTCAAGGCACAGTTAATGGATTGGAACGAGTAAGGGTTTATCAATCGGACCCGGCAGCGATTCTC TACTCCTCGGGGACAACAGGGAGATTCAAAGGAGTGTTGCTGACACACCGGAACTTCATATCCATGCTGGCTGCTACTATTGCGACTCGTGGCGTGAAGA ATAAGATCACTGCTGTCACTTTGTGTACGGTGCCATACTTCCACGCGTACGGTTTTGTATACTGTTTAAGATTGGCAGCGATGGGGAACACGCTGGTGTC CATGGGGAGGTTTGATTTAAGTGCGATGCTGAGTGCGATTCAAGACTATAGGGTGAGCCACGTGGCAGTGGCACCACCGGTGGTGGTGGCGATGGTTAAA AATGTTGGAGCAATGGATGGCTATGATTTGAGCTCTCTTGAAGTGGTGGCATGTGGGGGAGCTCCTCTAAGGAAAAGTGTCCTTGAGCTGTTCAAGGAAA GGTTTCCCAATGTGCATATTGCCCAGGGATATGGGCTGACAGAAACAACGGCCCGAATATTTGCAACAGTAGGGCCTAAAGAAAGTGAAGTCATTGGAGC AACAGGAAAGCTTATATCAAATTGCCAGGCAAAGATTGTTGATCCAGACACTGGTGTCTCTCTTCCCCCTTTCAGTCCCGGGGAGCTTTGGGTTAGAGGA GACACTATTATGAAAGGTTACATTGGCGATGACAAAGCAACTGCTGCAACTTTGGATTCCGGAGGATGGTTGAGAACTGGGGACCTTTGTTATATCGACA ATGAAGGCTTCTTGTTTTTCGTGGATCGTATTAAGGAACTGATCAAATGCAAAGGCTACCAGGTTGCCCCAGCAGAACTTGAGCATCTGCTCCAATCGAA TCCAGATATCATTGAGGCAGCTGTAATCCCGATTCCTGATGAGGAAGCAGGTCAAGTGCCTGTGGCCTTTGTGGTAAGACAAAATGGAAGCATTATTGAC GAATCAAAAATCAAGGATTTTGTTGCCAGACAGGTTGCACCATACAAGAGATTACGACGAGTGATGTTCATTGAATCATTACCTAGGAATGCCACCGGTA AGGTGCCGAAAAAGGAACTAATCAATCTTGCGTTATCGAATGCCACCTCTAAGCTGTAA
AA sequence Show only first row Show all	>Potri.010G057000.1 pacid=42797965 polypeptide=Potri.010G057000.1.p locus=Potri.010G057000 ID=Potri.010G057000.1.v4.1 annot-version=v4.1 MENQPATLIDPKSGFCSKTNTYHSLRPHLELPPITTPVSATEYAISLLLYSSPSPPQTTALLDAVTGRRISFPELIHFTETLASSLLNRFRLKKGDTAFI LSPNSIHIPILYLSLFSLGVVISPSNPLSSEQEILHQTNLSKPVIAFVTSQTAHKIPYSVKKTILLDSPEFESLMTSQTQGTVNGLERVRVYQSDPAAIL YSSGTTGRFKGVLLTHRNFISMLAATIATRGVKNKITAVTLCTVPYFHAYGFVYCLRLAAMGNTLVSMGRFDLSAMLSAIQDYRVSHVAVAPPVVVAMVK NVGAMDGYDLSSLEVVACGGAPLRKSVLELFKERFPNVHIAQGYGLTETTARIFATVGPKESEVIGATGKLISNCQAKIVDPDTGVSLPPFSPGELWVRG DTIMKGYIGDDKATAATLDSGGWLRTGDLCYIDNEGFLFFVDRIKELIKCKGYQVAPAELEHLLQSNPDIIEAAVIPIPDEEAGQVPVAFVVRQNGSIID ESKIKDFVARQVAPYKRLRRVMFIESLPRNATGKVPKKELINLALSNATSKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63380			AMP-dependent synthetase and l...		Potri.010G057000 [exp]	0	1	Ptr4CL12
AT4G28940			Phosphorylase superfamily prot...		Potri.006G161538 [exp]	2.44	0.9785
AT5G44440			FAD-binding Berberine family p...		Potri.011G158100 [exp]	3.46	0.9798
AT4G37980		ELI3-1, ATCAD7	CINNAMYL-ALCOHOL DEHYDROGENASE...		Potri.001G268600 [exp]	4.00	0.9716	CADL9,CAD.6
AT4G34131		UGT73B3	UDP-glucosyl transferase 73B3 ...		Potri.009G098966 [exp]	4.58	0.9699
AT4G37290			unknown protein		Potri.005G142900 [exp]	7.07	0.9715
AT3G49780		ATPSK3(FORMERSY...	phytosulfokine 4 precursor (.1...		Potri.014G014000 [exp]	7.14	0.9718
AT4G37290			unknown protein		Potri.016G015600 [exp]	9.79	0.9700
AT1G55230			Family of unknown function (DU...		Potri.001G008900 [exp]	9.89	0.9621
AT3G27150			Galactose oxidase/kelch repeat...		Potri.001G331500 [exp]	10.72	0.9537
					Potri.018G091032 [exp]	11.31	0.9696

Compare expression of checked genes

Potri.010G057000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.