Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27900 1077 / 0 RNA helicase family protein (.1) AT1G32490 544 / 0 EMB2733, ESP3 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) AT3G26560 541 / 6e-179 ATP-dependent RNA helicase, putative (.1) AT2G35340 532 / 1e-176 MEE29 maternal effect embryo arrest 29, helicase domain-containing protein (.1) AT5G13010 523 / 7e-171 EMB3011 embryo defective 3011, RNA helicase family protein (.1) AT3G62310 484 / 3e-162 RNA helicase family protein (.1) AT2G47250 483 / 1e-161 RNA helicase family protein (.1) AT4G18465 446 / 8e-148 RNA helicase family protein (.1) AT1G26370 424 / 8e-139 RID1 RNA helicase family protein (.1) AT4G16680 402 / 4e-131 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G024400 [exp] 541 / 1e-178 AT3G26560 1768 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.012G034200 [exp] 539 / 1e-177 AT3G26560 1744 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.015G008700 [exp] 518 / 4e-171 AT1G32490 1541 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Potri.010G172500 [exp] 519 / 4e-169 AT5G13010 1715 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Potri.014G117900 [exp] 479 / 5e-160 AT3G62310 1252 / 0.0 RNA helicase family protein (.1) Potri.002G192500 [exp] 475 / 1e-158 AT3G62310 1276 / 0.0 RNA helicase family protein (.1) Potri.004G052700 [exp] 451 / 2e-149 AT4G18465 1092 / 0.0 RNA helicase family protein (.1) Potri.008G096800 [exp] 414 / 1e-134 AT1G26370 1019 / 0.0 RNA helicase family protein (.1) Potri.017G050100 [exp] 300 / 2e-87 AT4G01020 1719 / 0.0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036991 [exp] 1149 / 0 AT1G27900 1089 / 0.0 RNA helicase family protein (.1) Lus10015812 [exp] 1148 / 0 AT1G27900 1097 / 0.0 RNA helicase family protein (.1) Lus10036783 [exp] 540 / 7e-178 AT3G26560 1790 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10031647 [exp] 505 / 5e-165 AT1G32490 1545 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10037145 [exp] 500 / 7e-164 AT3G26560 1529 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10005261 [exp] 459 / 1e-151 AT3G62310 1300 / 0.0 RNA helicase family protein (.1) Lus10033690 [exp] 450 / 2e-142 AT1G32490 1399 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10025127 [exp] 415 / 2e-135 AT4G18465 1033 / 0.0 RNA helicase family protein (.1) Lus10037067 [exp] 405 / 2e-131 AT1G26370 927 / 0.0 RNA helicase family protein (.1) Lus10009600 [exp] 318 / 1e-100 AT5G13010 907 / 0.0 embryo defective 3011, RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] PF04408 [poplar] [flax] HA2 Helicase associated domain (HA2) CL0021 [poplar] [flax] OB PF07717 [poplar] [flax] OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold
Representative CDS sequence Show only first row Show all	>Potri.010G057200.1 pacid=42799893 polypeptide=Potri.010G057200.1.p locus=Potri.010G057200 ID=Potri.010G057200.1.v4.1 annot-version=v4.1 ATGGCGAGTCATCTGCCTATAGTGCAATTCGAAGACAAAATAATGAAAACCGTGGAAGATAATGCTGTGGTAGTGATAATTGGAGAGACTGGTTCAGGAA AGAGTACTCAACTCTCTCAGATGCTTCACCGCAGAGGCTACACCAAATCCGGAATTATTGCCGTCACTCAGCCCCGTCGAGTCGCCGCCGTCTCCGTTGC AAGACGCGTTGCGCAGGAGCTCGGCGTTACTCTTGGGGAGGAAGTGGGTTATGCCATTCGATTTGAAGACAGAACTTCAGATTTGACCCGGATCAAGTAC CTTACTGATGGAGTGCTCCTTCGCGAATGTCTGTCTAACCCGGAGCTTAATCAGTATTCAGTGATCATATTGGATGAAGCTCATGAGAGGAGTTTGAACA CGGATATTTTGATGGGACTGGTGAAACGTTTGGTTAAAATGCGTGCCTCCAAATTGAAGGTTCTCATCACTTCAGCTACTCTCGATGGTGAAAAAGTATC AGAATTCTTTTCGGACTGCCCTGTATTGAATGTCCCTGGAAAGTTATACCCGGTGGAAATATTGTACAGTGAGGAGCGTCCTAAAAGCTATATCGAGTCT TCTTTCAGAACAGCTATGGATATACATGTTCGGGAACCAGAAGGTGATGTCTTAATTTTCATGACCGGACAGGATGATATAGATAAATTGGTTTCAAAGT TGGAGGATAGAGTTCAAAGCCTAGAGGAAGGCTCCTGCATGGATGCAATTATCCTTCCACTTCATGGTTCTTTACCACCTGAACTGCAGGTGCGTGTATT TAGCCCTCCACCTCCAAACTGTAGGCGATTTATCGTTGCAACAAATATTGCTGAAACTTCTTTGACTGTTGATGGCGTTGTATACGTTATTGATTCTGGA TATGTAAAGCAACGGCAATACAACCCGTCAACCGGCATGTATTCTCTTGATATTGTTCCAATTAGCAAAGTGCAGGCAAATCAGCGTGCAGGACGAGCTG GAAGAACACGACCTGGAAAGTGCTATCGGCTATATTCCTCTGAGGTTTACCAAGAAGAATTGCTTGATGTAACAGTTCCTGAAATACAGCGGTCTTCTCT TGCTGGGAGTGTTCTTTACTTGAAATCATTAGATCTGCCAGATATTGACATTCTCAAGTTTGATTTTCTCGATCCCCCTTCATTTGAGTCACTAGAAGAT GCTTTAAAGCAACTATATCTCATTGATGCCATAGACGATACTGGTTTGATCACAAGTGTTGGACAAACGATGGCTGAACTTCCACTAGAACCCTCACTTT CAAGAACCTTGATGGAGGCAAATGAGAATGGTTGCTTATCCCAGGCTTTGACTGTTGCAGCCATGTTGTCAGCGGAAACCACGTTACTTGCGGGACAAAG TAGCAAGAGTAATGAAAAGAAGAGGAAACACCCTCCCCCCGACCTTCCTGATGGTTCTGGTTATGGTGATCATGTTCAGTTGCTACAGATTTTTGAGCAA TGGGATCAAAACGAATTTGATATTGGCTGGTGCAAAGACAAAGGTTTGCAGGTGCGAGGGATGATGTTTGTCAAAGATGTGCGAAGACAGTTGTCCCAGT TAATGCAAAAAATAGCAAAGGGGTCATTAAATGTACGAACAATTGAAAGATATAAAGAAAGACAACGGGATTACAAGAATTTGAGGAAGGCTTTGTGTGT TGGCTATGCAAATAAGCTTGCCGAGAGAATGGTACAACACAATGGCTATAGAACTATAGGTTTCAAGCCACAACTAGTTCAGGTGCATCCATCCTCCACT CTGAAAACAGATGAAGATGGAATGTTTCCAAACTACGTTGTGTATCATGAACTCATTGCCACCTCCCGTCCATTTATGCGCAATGTATGTGCTGTAGAGA TGCCATGGGTCAACCCCATTTTGAAGAAGCTTGAGAAACTGAATATCGACAAGCTAAGTGGGGGATCTGGTCATAGTATTAGAGAGGAAAGTGAGACAAA GGTCTCCTCCTTGCCAAAGAAAGAGGAGGCTGTTACTGGAGTTCCAGATGACCGTGAAAGTAGAATTCAGGCAGCTAGGGATCGCTTTCTTGCTCGTAAA GGAAAGAAATGA
AA sequence Show only first row Show all	>Potri.010G057200.1 pacid=42799893 polypeptide=Potri.010G057200.1.p locus=Potri.010G057200 ID=Potri.010G057200.1.v4.1 annot-version=v4.1 MASHLPIVQFEDKIMKTVEDNAVVVIIGETGSGKSTQLSQMLHRRGYTKSGIIAVTQPRRVAAVSVARRVAQELGVTLGEEVGYAIRFEDRTSDLTRIKY LTDGVLLRECLSNPELNQYSVIILDEAHERSLNTDILMGLVKRLVKMRASKLKVLITSATLDGEKVSEFFSDCPVLNVPGKLYPVEILYSEERPKSYIES SFRTAMDIHVREPEGDVLIFMTGQDDIDKLVSKLEDRVQSLEEGSCMDAIILPLHGSLPPELQVRVFSPPPPNCRRFIVATNIAETSLTVDGVVYVIDSG YVKQRQYNPSTGMYSLDIVPISKVQANQRAGRAGRTRPGKCYRLYSSEVYQEELLDVTVPEIQRSSLAGSVLYLKSLDLPDIDILKFDFLDPPSFESLED ALKQLYLIDAIDDTGLITSVGQTMAELPLEPSLSRTLMEANENGCLSQALTVAAMLSAETTLLAGQSSKSNEKKRKHPPPDLPDGSGYGDHVQLLQIFEQ WDQNEFDIGWCKDKGLQVRGMMFVKDVRRQLSQLMQKIAKGSLNVRTIERYKERQRDYKNLRKALCVGYANKLAERMVQHNGYRTIGFKPQLVQVHPSST LKTDEDGMFPNYVVYHELIATSRPFMRNVCAVEMPWVNPILKKLEKLNIDKLSGGSGHSIREESETKVSSLPKKEEAVTGVPDDRESRIQAARDRFLARK GKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27900			RNA helicase family protein (....		Potri.010G057200 [exp]	0	1
AT1G17450			B-block binding subunit of TFI...		Potri.003G064000 [exp]	1.73	0.8562
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Potri.002G137800 [exp]	4.24	0.8399
AT5G22450			unknown protein		Potri.004G203500 [exp]	5.29	0.8412
AT5G67570		EMB246, DG1, EM...	EMBRYO DEFECTIVE 246, embryo d...		Potri.007G004900 [exp]	8.94	0.8315
AT1G63500			Protein kinase protein with te...		Potri.003G126700 [exp]	9.38	0.8374
AT1G79030			Chaperone DnaJ-domain superfam...		Potri.001G438300 [exp]	11.83	0.8161
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Potri.005G129800 [exp]	12.72	0.8354
AT3G54610		ATGCN5, HAG1, H...	HISTONE ACETYLTRANSFERASE 1, g...		Potri.002G045900 [exp]	13.11	0.7697	HAG906,HAT1.6
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Potri.015G050800 [exp]	14.45	0.8230
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Potri.016G075700 [exp]	15.09	0.8210	Pt-SPY.1

Compare expression of checked genes

Potri.010G057200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.