Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14230 844 / 0 unknown protein AT2G03430 58 / 6e-09 Ankyrin repeat family protein (.1) AT5G37500 59 / 1e-08 GORK gated outwardly-rectifying K+ channel, gated outwardly-rectifying K+ channel (.1) AT5G02620 57 / 4e-08 ATANK1, ANK1 ankyrin-like1 (.1) AT5G57740 55 / 1e-07 XBAT32 XB3 ortholog 2 in Arabidopsis thaliana (.1) AT5G13530 54 / 4e-07 KEG KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) AT2G25600 52 / 1e-06 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT5G13300 51 / 3e-06 AGD3, VAN3, SFC ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) AT1G05640 51 / 3e-06 Ankyrin repeat family protein (.1) AT5G40160 50 / 3e-06 EMB139, EMB506 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G333600 [exp] 969 / 0 AT5G14230 975 / 0.0 unknown protein Potri.011G151300 [exp] 633 / 0 AT5G14230 568 / 0.0 unknown protein Potri.010G185200 [exp] 67 / 3e-11 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.010G161300 [exp] 62 / 2e-10 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1) Potri.017G135400 [exp] 63 / 5e-10 AT3G02850 1269 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.006G176600 [exp] 62 / 6e-10 AT5G57740 597 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1) Potri.004G083300 [exp] 61 / 2e-09 AT3G02850 1268 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.013G062000 [exp] 61 / 3e-09 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1) Potri.018G098400 [exp] 59 / 8e-09 AT5G57740 611 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015811 [exp] 940 / 0 AT5G14230 727 / 0.0 unknown protein Lus10022339 [exp] 880 / 0 AT5G14230 974 / 0.0 unknown protein Lus10041588 [exp] 869 / 0 AT5G14230 962 / 0.0 unknown protein Lus10036990 [exp] 681 / 0 AT5G14230 510 / 5e-174 unknown protein Lus10036989 [exp] 258 / 5e-81 AT5G14230 224 / 2e-68 unknown protein Lus10020272 [exp] 72 / 9e-13 AT5G13530 97 / 9e-21 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10002621 [exp] 68 / 8e-12 AT5G13530 99 / 6e-22 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10019944 [exp] 67 / 4e-11 AT4G22200 1111 / 0.0 potassium transport 2/3 (.1) Lus10007432 [exp] 63 / 4e-10 AT2G31800 69 / 3e-13 Integrin-linked protein kinase family (.1) Lus10003748 [exp] 63 / 5e-10 AT1G07710 83 / 6e-18 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies)
Representative CDS sequence Show only first row Show all	>Potri.010G057300.1 pacid=42800233 polypeptide=Potri.010G057300.1.p locus=Potri.010G057300 ID=Potri.010G057300.1.v4.1 annot-version=v4.1 ATGACAGTATTTGGGAACTCCGGCGCCGTATTTCTAGCCGGAAAACAGGTGTTTCCAGTTGATTACCAGGCAGAGGTTTCACAGAAACTCGTCGATGCTT CGCATAATAATGATTTAAAACTGGCACTTCAGTGTCTTGAAGATCCTTTTGTGGACGTCAACTTCATCGGAACTGTCAGCTTGAAGTCAAAGAAGACTGA AGTCTTGTTGCACGATGAGGCGGCGCATGAAGTTCATGTTGAATACGAGGAGTTCAAGACCGACGTTACTGCTCTCTTCCTCGCTGCTCATGCCGGGAAT TTAACACTTGTCAGAAAGCTACTGAGTCTTGGAGCCAATGTAAATCAGAAACTGTTTCGAGGCTATGCCACAACAGCAGCAATAAGGGAGGGGCATTTGG ATATATTAGACATACTAGTGAAATCTGGGGCATCTCAGGAGGCATGCGAGGAGGCTTTATTAGAGGCAAGCTACCTTGGGCAGGCCAGGCCTGCAGAGCT GCTCATGGGGTCTGACTTGATACGCCCACAAGTTGCTGTTCATACACTTGTATCTGCATGCTGTCGAGGGTTTGCCAATGTAGTCGACACACTCGTCAAG TGTGGAGTAGATGCCAGTGCAATCGATAGGGTTCTGCTTCGATCATCTAAGCCACCACTTCATGCTAATGTTGACTGTAATGCACTTGCTGCTGCCATTG TTAGTAGACAGATCTCTGTTGTTAGATTGCTGCTGCAGGTTGGAGTTGGGACGGACATGAAGGTGAGACTGGGAGCCTGGTCTTGGGACATGGACACCGG GGAAGAATTCCGAGTTGGTGCAGGACTAGCTGAAGCGTATTCAATCACCTGGTGTGCTGTGGAGTATTTTGAAGCCAGTGGTGCTATATTGCGCATGCTC CTTGAGCACCTCTCTCCTAACATCCCTCACTTTGGGAGAACTCTCATCCACCATGCCATTCTATGCAGTAATGCACGAGCGGCAGAAGTGTTACTAAATT GCGGTGCAGATAAAGAACTTCCAGTGAAAACAACTTTGAAAAATGATTTACGTCCTGTGCATTTAGCTGCACGGCTTGGAACACTGAAAGTTCTTGAACA GCTGGTCTTTGCTAGCTGTGATCTCAACTCTAGAACAGATTCCGGAGAAACTGCCATAATGATATGTGCTAGGTACAGGCAAGAAGAGTGCCTAAAAGTT CTTGTCTCAGCTGGTGCTGATCTTGGTCTGGTTAATTCAGCTGGTCTGTCTGCTAGCTCAATAGCAAGGTCAGCTAGATGGGCTCTTGGCTTTCAGCAAG CTGTGGTAGATGCGATTCGAGACGGGAAGAGTGCCAAGTCAAGCAATGCTGCAGTGTTTTCCCCTTTAAAGTGTGTGGTTCAAGCAAATGCTGTTGAGGC CTTGAAAAAACTTATTGAGCAGTCCTATATTGATCTTGATGAACAAGATGATGATGGATTCTCTGCTGCCATGACTGCAGCAGCTAATGGTTACATCGAG GCTTTCCGGTTGCTTGTCCATGCCGGAGCTAATATAAAGCTTCAAAACAGATTTGGTGACACGGCAATCAGCTTATCAGAGTTAAACCAACATGGCGAGG CAATTGAAAAGGTGATGATAGAGTATGCACTCAAAGAGGGATATAACTATTCCGCCAGCATTCATGCTCTACATCGTGCAGCACGCAGGGGAGACTTAGA TTTGGTTTGTATGTTAGCTAGAAAGGGTTACGATGTCAATGCATCTGATGGCGATGGATACACTCCACTAATGCTAGCTGCAAGGGAAGGGCATGGTAAG GTGTGTGAGCTTCTAATCTCTCGTGGGGCTCAATGCGATCTTGAGAATGAAAGATGTGAAACTGCACTGTCTCTTGCAATGAAGAATGGTTATAAAAACG AGGCAGAGCATGTAATATTGGATGAGCTTTCTCGACAACTTGTTCTGGAGGGGAATCGTGTCAAGAAGCACATAAAGTGTGGGAAAGGGGCTCCTCATTA CAAATTATTGAGGATGGTAGATGCTTCTGGGACTCTGCGATGGGGAAAGTCAAGCAAGAGAAACGTAGTTTGCAAGGGTGCCGAGGTTGGTCCAAGCACA AAATTCCGCTGGAATCGTCGTAAAAAGCTTGATGTCGAGGACCCAGGAATGTTCCATGTGATAACTACAAAGAACAGGGAGGTGCACTTTGTGTGTGAAG GTGGGGTTGAAATGGCCGAACTGTGGGTGAGGGGAATCAAGCTGATCACGAGAGAAGCCATTTTTGGCAAGAAAAAAGAGTAA
AA sequence Show only first row Show all	>Potri.010G057300.1 pacid=42800233 polypeptide=Potri.010G057300.1.p locus=Potri.010G057300 ID=Potri.010G057300.1.v4.1 annot-version=v4.1 MTVFGNSGAVFLAGKQVFPVDYQAEVSQKLVDASHNNDLKLALQCLEDPFVDVNFIGTVSLKSKKTEVLLHDEAAHEVHVEYEEFKTDVTALFLAAHAGN LTLVRKLLSLGANVNQKLFRGYATTAAIREGHLDILDILVKSGASQEACEEALLEASYLGQARPAELLMGSDLIRPQVAVHTLVSACCRGFANVVDTLVK CGVDASAIDRVLLRSSKPPLHANVDCNALAAAIVSRQISVVRLLLQVGVGTDMKVRLGAWSWDMDTGEEFRVGAGLAEAYSITWCAVEYFEASGAILRML LEHLSPNIPHFGRTLIHHAILCSNARAAEVLLNCGADKELPVKTTLKNDLRPVHLAARLGTLKVLEQLVFASCDLNSRTDSGETAIMICARYRQEECLKV LVSAGADLGLVNSAGLSASSIARSARWALGFQQAVVDAIRDGKSAKSSNAAVFSPLKCVVQANAVEALKKLIEQSYIDLDEQDDDGFSAAMTAAANGYIE AFRLLVHAGANIKLQNRFGDTAISLSELNQHGEAIEKVMIEYALKEGYNYSASIHALHRAARRGDLDLVCMLARKGYDVNASDGDGYTPLMLAAREGHGK VCELLISRGAQCDLENERCETALSLAMKNGYKNEAEHVILDELSRQLVLEGNRVKKHIKCGKGAPHYKLLRMVDASGTLRWGKSSKRNVVCKGAEVGPST KFRWNRRKKLDVEDPGMFHVITTKNREVHFVCEGGVEMAELWVRGIKLITREAIFGKKKE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14230			unknown protein		Potri.010G057300 [exp]	0	1
AT1G23550		SRO2	similar to RCD one 2 (.1)		Potri.006G231500 [exp]	19.07	0.6226
AT4G11090		TBL23	TRICHOME BIREFRINGENCE-LIKE 23...		Potri.003G137800 [exp]	19.77	0.6309
AT5G45460			unknown protein		Potri.006G013600 [exp]	27.69	0.6384
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Potri.004G078200 [exp]	46.95	0.6450
AT5G37630		EMB2656	EMBRYO DEFECTIVE 2656, ARM rep...		Potri.004G085500 [exp]	49.31	0.6294
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Potri.007G017100 [exp]	61.18	0.5961	Pt-ALDH3.2
AT1G50660			unknown protein		Potri.004G015800 [exp]	63.35	0.6294
AT1G66250			O-Glycosyl hydrolases family 1...		Potri.017G130200 [exp]	76.28	0.6293
AT4G08150	HD	BP1, KNAT1	BREVIPEDICELLUS 1, BREVIPEDICE...		Potri.002G113300 [exp]	79.59	0.5855	KNAT1.1
AT1G52720			unknown protein		Potri.003G059900 [exp]	134.45	0.5520

Compare expression of checked genes

Potri.010G057300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.