Plant FIBer expression Database

Potri.010G057400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G08530 864 / 0 CI51 51 kDa subunit of complex I (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G177801
[exp]
174 / 3e-53 AT5G08530 153 / 7e-46 51 kDa subunit of complex I (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036999
[exp]
654 / 0 AT5G08530 632 / 0.0 51 kDa subunit of complex I (.1)
Lus10015808
[exp]
456 / 6e-159 AT5G08530 440 / 6e-153 51 kDa subunit of complex I (.1)
Lus10015807
[exp]
222 / 5e-71 AT5G08530 216 / 1e-69 51 kDa subunit of complex I (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0105 Hybrid PF01512 Complex1_51K Respiratory-chain NADH dehydrogenase 51 Kd subunit
CL0072 Ubiquitin PF10531 SLBB SLBB domain
CL0072 PF10589 NADH_4Fe-4S NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
Representative CDS sequence
>Potri.010G057400.4 pacid=42798135 polypeptide=Potri.010G057400.4.p locus=Potri.010G057400 ID=Potri.010G057400.4.v4.1 annot-version=v4.1
ATGGCACCCATTAGGGGTATTTTTTCTTTGCAAAGAACAGCTTTGGTGCGTCAAAGTGAGAGGTTGGGAGTTGGCTTCAGGTCATTCAGTACCCAAGCTC
CAACAAATGCTGGTGCTCCTCAGCCTCCGCCACCTCCCCCACCTCCGGAGAAAACTCATTTTGGAGGCCTCAAAGATGAGGACCGAATTTTTACTAACGT
GTACGGATTGCATGACCCTTTCCTCAAAGGTGCCATGAAACGGGGTGACTGGTATAGAACTAAGGACTTGGTGCTCAAAGGTACTGACTGGATTGTTAAT
GAAGTTAAGAAATCTGGCCTCCGAGGACGCGGTGGTGCTGGTTTCCCATCTGGTCTCAAATGGTCATTTATGCCAAAAACATCTGATGGTCGCCCTTCCT
ATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGCAAAGACAGGGAAATCATGCGGCATGATCCACACAAGCTCTTAGAGGGATGCTTGATTGC
TGGGGTAGGAATGAGAGCTTCTGCTGCATATATCTACATTAGGGGTGAATATGTGAATGAACGAATAAATCTGGAAAGAGCCAGAAAAGAAGCTTATGAA
GCTGGGCTGTTGGGCAAGAATGCATGTGGATCTGGTTATGATTTTGATGTCCATATCCACTACGGTGCTGGTGCTTATATTTGTGGTGAAGAGACAGCGC
TTTTGGAAAGCCTTGAAGGAAAACAAGGGAAACCAAGATTGAAGCCTCCTTTCCCAGCTAATTCTGGGCTGTATGGCTGCCCCACCACTGTTACAAATGT
GGAAACAGTGGCTGTCTCTCCCACCATTTTAAGGCGTGGTCCAGAGTGGTTTGCAAGTTTTGGCCGAAAGAACAACTCTGGGACTAAATTATTTTGTGTG
TCAGGTCATGTGAACAAGCCTTGCACAGTTGAAGAGGAGATGAGCATACCACTGAAGGAGTTAATAGAGAGGCACTGTGGAGGTGTTCGAGGTGGATGGG
ACAATTTACTTGCTGTGATACCAGGGGGTTCTTCTGTCCCACTGCTTCCCAAGCACATATGTGATGACGTGCTTATGGATTATGATGCACTTAAAGCTGT
CACATCAGGATTAGGGACTGCAGCGGTGATTGTGATGGATAAATCTACTGATGTCGTGGATGCAATTGCAAGGCTGTCTTACTTCTACAAGCACGAGAGC
TGTGGACAGTGCACCCCATGCAGGGAGGGAACAGGATGGCTTTGGATGATCATGGAAAGGTTGAAGGTTGGGAATGCAAAGTTGGAAGAGATAGATATGC
TTCAGGAGGTGACCAAACAGATTGAAGGCCACACCATCTGTGCATTGGGTGATGCTGCAGCTTGGCCTGTACAGGGTCTTATAAGGCATTTTAGGCCAGA
GCTTGAGAGAAGGATTAAGGAGCGTGCAGAAAGGGAATTGCTGGAGGCTGCTGCTTAA
AA sequence
>Potri.010G057400.4 pacid=42798135 polypeptide=Potri.010G057400.4.p locus=Potri.010G057400 ID=Potri.010G057400.4.v4.1 annot-version=v4.1
MAPIRGIFSLQRTALVRQSERLGVGFRSFSTQAPTNAGAPQPPPPPPPPEKTHFGGLKDEDRIFTNVYGLHDPFLKGAMKRGDWYRTKDLVLKGTDWIVN
EVKKSGLRGRGGAGFPSGLKWSFMPKTSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERINLERARKEAYE
AGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANSGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTKLFCV
SGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHES
CGQCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKERAERELLEAAA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G08530 CI51 51 kDa subunit of complex I (.... Potri.010G057400
[exp]
0 1
AT1G52855 unknown protein Potri.019G104100
[exp]
2.82 0.7494
AT3G56460 GroES-like zinc-binding alcoho... Potri.019G065700
[exp]
5.47 0.7022
AT1G51200 A20/AN1-like zinc finger famil... Potri.016G051700
[exp]
5.74 0.7586
AT5G41210 GSTU12, GST10, ... glutathione S-transferase THET... Potri.001G105600
[exp]
6.00 0.7475 ATGSTT1.3
AT4G34720 ATVHA-C1, AVA-P... VACUOLAR H+-PUMPING ATPASE C1,... Potri.009G125000
[exp]
9.53 0.7906 Pt-AVAP5.2
AT4G29040 RPT2A regulatory particle AAA-ATPase... Potri.002G252600
[exp]
10.24 0.7521 Pt-RPT2.2
AT4G13360 ATP-dependent caseinolytic (Cl... Potri.006G156350
[exp]
10.95 0.7298
AT1G53750 RPT1A regulatory particle triple-A 1... Potri.006G216600
[exp]
12.40 0.7770 RPT1.5
AT1G78900 VHA-A vacuolar ATP synthase subunit ... Potri.010G253500
[exp]
15.49 0.7159
AT5G13430 Ubiquinol-cytochrome C reducta... Potri.001G067900
[exp]
15.49 0.7547

Potri.010G057400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.