Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43230 560 / 0 unknown protein AT3G01810 532 / 2e-176 unknown protein AT3G57780 481 / 1e-159 unknown protein AT2G42320 480 / 2e-159 nucleolar protein gar2-related (.1.2) AT5G06930 350 / 4e-109 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G177500 [exp] 1291 / 0 AT5G43230 565 / 0.0 unknown protein Potri.001G333200 [exp] 605 / 0 AT3G01810 652 / 0.0 unknown protein Potri.016G051500 [exp] 514 / 5e-171 AT2G42320 645 / 0.0 nucleolar protein gar2-related (.1.2) Potri.006G056800 [exp] 498 / 2e-164 AT2G42320 618 / 0.0 nucleolar protein gar2-related (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037001 [exp] 774 / 0 AT3G01810 583 / 0.0 unknown protein Lus10041590 [exp] 541 / 5e-179 AT3G01810 603 / 0.0 unknown protein Lus10022341 [exp] 524 / 4e-172 AT3G01810 605 / 0.0 unknown protein Lus10015804 [exp] 487 / 6e-167 AT5G43230 371 / 2e-122 unknown protein Lus10011304 [exp] 481 / 6e-159 AT2G42320 688 / 0.0 nucleolar protein gar2-related (.1.2) Lus10040502 [exp] 478 / 2e-157 AT2G42320 685 / 0.0 nucleolar protein gar2-related (.1.2) Lus10015805 [exp] 188 / 2e-50 AT3G01810 160 / 5e-41 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G057700.7 pacid=42800261 polypeptide=Potri.010G057700.7.p locus=Potri.010G057700 ID=Potri.010G057700.7.v4.1 annot-version=v4.1 ATGAAGGGAATGATGATGAAGTTGAGATTGCCTCATTTACTGACGACGACGACGACGAACGACGGTTCCTCACATTCATCACTACCCGTTTCCTCTTCTG AATTGGAGTCTAGAAGAGGTTCACCAGGTCAATCTGACAAGAAGGGATCAGGAACAGCAAACATTGGCACAAGAAGGATTGACGGGGAGCCTGCATTGCT CTCAGGTGTAGCGCCTTCAAACCTAGAAGCGAAATCAGCAGCTCAAGAATTCAAACATCTGAACGGAGGCTTGGGAGAGTTTCAAACTAAACAAGATGCT GATAGAAAACCCTGGAGACATGAAATAAATGGACTAGAGAATGCTACAACTGATAATTTAAAAGATGATCTTATGGATGTGAAAGAGAAAAGGGAGCTGG ATGACAAGGGACAGGGTACAGTTATTTTAGAGTTAAAGAAACCTGCTCTAGAGGAAAAGTTTCCCGGTAAATTACCTGAAGATGCATCAAAAAAGCAAGC CAAATTAAGGAGCAATACTCTTGCACTCAACAGAACAGCAATTGGAGTGCAGGGTACCACCCGTAGAGATAAACTGAAGCATCTGAAGTCTGTTCAATTA CAGTTTAACTCAGCTGAGGGCGAGGATCCCTTCATCAATAGCCAATTCATAGAGAAGGCAAAGAAGATTAATATTTCTGAAAATGTTAATAAAGGTGCCA AGGGCTATCCTCGCAGTGAAAGAGAAAAATCAACAAAAGGGTCTTATGACAACCAAGGTGAATCAAATTCTGAAGTTGAAATACTCAAGGAAGAGTTAAG CAGAGCTGCTGCCAAGGATGGCCTTGCTGAGCAAGGAAATTCTAAAATAAAGTTCCAGTTGATGGAGAAGGAAAAGGAAATTGATCTTCCTGAAAATGTT AATAAAGTTGACATGAGTTATGAACAAAGTAAAAGGGAAGAAGAAACAAAAGGCAACTTTTCAGGAAACAAAGTTGAACTGGAGTCTAAAGTTGAAATGC TTGAGGAAGAATTGATGGAAGCTGCAGCTGTTGAGGTTGGCCTTTACTCAGTTGTTGCTGAGCATGGGAGTTCTATAAATAAGGTCCTAGCTCCAGCAAG GCGCCTTTCAAGGTTCTATCTTTATGCTTGCGAGGCAGGGTCCTGGGCCAAGAGGGCAAATGCAGCTAGAGCTATCATCTCAGGATTAATTTTGGTTTCT AAAGCATGTGGAAATGATGTTCCAAGGTTAACTTTCTGGTTGTCAAATTCGATTGTGCTAAGAGCAATTGTAAGCCAAGCTGTTGAGAAGTTGCAACTTG CTTCAGTACCATCCAGCATTAATAATGGAGGTCCAAAGGGCAGGCAGGAGTCGACTCTAACTGAAGGAGAGAAAACTAATAAAACAGAAAGTCTCGATGA ATGGGCAGAACCTCAACCATATATAGCAGCATTAGAGAAGGTTGAAGCTTGGATCTTCTCCCGAATTGTTGAGTCAGTTTGGTGGCAGACTCTGACGCCA CATATGCAATCCACAGCTGTAAAGAGCTCAAACTCCAGGAAGACCCATGCTAAGAGGCATGGATTGGGTGATCAAGAACAGGGGAATTTTGCTATTGATT TATGGAAGAAGGCTTTCAGGGATGCATGTGAAAGGCTTTGTCCTGTTCGAGCTGGGGGTCATGAATGTGGTTGCTTGCCTGTGCTGTCAAGATTGGTGAT GGAACAGTTGGTGAGTAGATTAGATGTGGCCATGTTCAATGCTATACTTCGTGAATCAGCTGAAGAGATGCCGACAGATCCTGTTTCCGACCCGATCAGT GATCCTAAGGTTCTTCCAATCCCAGCTGGAAATTCAAGCTTCGGGGCTGGTGCACAATTGAAAAATGCTGTTGGAAATTGGTCCAGATGGCTCACGGATT TATTTGGTATTGATGATAGTGACTCTTCAGAAGAGAAGGATGAACTTTGTAGCATCAGGCGTGTAAGTGAGACATCCTTCAAGGCTTTCCAACTTCTGAA TGCTTTGAGTGATCTCATGATGCTTCCATTTGAAATGCTTGCAGATAGGTCCACTAGAAAAGAGGTATGCCCTTCATTTGATGCTCCGATGATCAAGAGG GTTCTTAACAATTTTGTCCCAGATGAATTCAACCCTGACCCAATCCCAGAGACCATTTTTGAGGCCCTGGATTCTGAGGATTTTGCTGAGGCTGGGGAGG AGTCTATCACAAACTTTCCATGTATTGCTGTTCCCACAATCTATTCTCCACCTCCTGCAGCGTCTCTAACAAACATTATAGGAGAGGTGGGAAGCCAAAC TCTGCAGAGGAGTGGATCAGCAATGCTTAGAAAGTCGTACACTAGTGATGATGAGCTTGATGAGTTGGATTCACCTATGACTTCTATCATTGAAAACTCC AAGGTTTTTCCCTCTTCGACAGCATGGAATTGGATGCAGAAGGGAAAGGCGGGCCGGAAAGTTGTTAGATATCAACTCCTCCGGGAAGTATGGAAGGATG GTGAATAG
AA sequence Show only first row Show all	>Potri.010G057700.7 pacid=42800261 polypeptide=Potri.010G057700.7.p locus=Potri.010G057700 ID=Potri.010G057700.7.v4.1 annot-version=v4.1 MKGMMMKLRLPHLLTTTTTNDGSSHSSLPVSSSELESRRGSPGQSDKKGSGTANIGTRRIDGEPALLSGVAPSNLEAKSAAQEFKHLNGGLGEFQTKQDA DRKPWRHEINGLENATTDNLKDDLMDVKEKRELDDKGQGTVILELKKPALEEKFPGKLPEDASKKQAKLRSNTLALNRTAIGVQGTTRRDKLKHLKSVQL QFNSAEGEDPFINSQFIEKAKKINISENVNKGAKGYPRSEREKSTKGSYDNQGESNSEVEILKEELSRAAAKDGLAEQGNSKIKFQLMEKEKEIDLPENV NKVDMSYEQSKREEETKGNFSGNKVELESKVEMLEEELMEAAAVEVGLYSVVAEHGSSINKVLAPARRLSRFYLYACEAGSWAKRANAARAIISGLILVS KACGNDVPRLTFWLSNSIVLRAIVSQAVEKLQLASVPSSINNGGPKGRQESTLTEGEKTNKTESLDEWAEPQPYIAALEKVEAWIFSRIVESVWWQTLTP HMQSTAVKSSNSRKTHAKRHGLGDQEQGNFAIDLWKKAFRDACERLCPVRAGGHECGCLPVLSRLVMEQLVSRLDVAMFNAILRESAEEMPTDPVSDPIS DPKVLPIPAGNSSFGAGAQLKNAVGNWSRWLTDLFGIDDSDSSEEKDELCSIRRVSETSFKAFQLLNALSDLMMLPFEMLADRSTRKEVCPSFDAPMIKR VLNNFVPDEFNPDPIPETIFEALDSEDFAEAGEESITNFPCIAVPTIYSPPPAASLTNIIGEVGSQTLQRSGSAMLRKSYTSDDELDELDSPMTSIIENS KVFPSSTAWNWMQKGKAGRKVVRYQLLREVWKDGE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43230			unknown protein		Potri.010G057700 [exp]	0	1
AT4G31860			Protein phosphatase 2C family ...		Potri.018G017800 [exp]	1.00	0.8844
AT2G42320			nucleolar protein gar2-related...		Potri.016G051500 [exp]	4.00	0.8633
AT3G07400			lipase class 3 family protein ...		Potri.002G249400 [exp]	6.32	0.8345
AT2G34400			Pentatricopeptide repeat (PPR-...		Potri.001G063709 [exp]	7.34	0.8422
					Potri.019G002502 [exp]	10.81	0.8221
AT1G13330		AHP2	Arabidopsis Hop2 homolog (.1)		Potri.010G127101 [exp]	10.95	0.8140
AT5G38560		AtPERK8	proline-rich extensin-like rec...		Potri.004G105200 [exp]	11.83	0.8337
AT1G67570			Protein of unknown function (D...		Potri.008G178100 [exp]	17.43	0.8290
AT2G34400			Pentatricopeptide repeat (PPR-...		Potri.018G144401 [exp]	17.43	0.7883
					Potri.003G152500 [exp]	24.49	0.8265

Compare expression of checked genes

Potri.010G057700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.