Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24330 1079 / 0 ARM repeat superfamily protein (.1) AT1G67530 1051 / 0 ARM repeat superfamily protein (.1.2) AT1G27910 1037 / 0 ATPUB45 ARABIDOPSIS THALIANA PLANT U-BOX 45, plant U-box 45 (.1) AT5G67340 194 / 2e-52 ARM repeat superfamily protein (.1) AT2G28830 167 / 2e-42 AtPUB12 PLANT U-BOX 12 (.1) AT3G46510 156 / 8e-40 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT4G36550 131 / 2e-31 ARM repeat superfamily protein (.1) AT1G23030 126 / 4e-30 PUB11 ARM repeat superfamily protein (.1) AT2G23140 124 / 7e-29 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT5G42340 118 / 3e-27 PUB15 Plant U-Box 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G177100 [exp] 1350 / 0 AT1G24330 1025 / 0.0 ARM repeat superfamily protein (.1) Potri.007G023700 [exp] 328 / 1e-100 AT1G67530 328 / 9e-101 ARM repeat superfamily protein (.1.2) Potri.005G122100 [exp] 312 / 5e-94 AT4G36550 441 / 2e-143 ARM repeat superfamily protein (.1) Potri.005G228100 [exp] 282 / 9e-84 AT4G36550 329 / 5e-102 ARM repeat superfamily protein (.1) Potri.001G238500 [exp] 171 / 9e-45 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.009G029600 [exp] 145 / 3e-36 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.002G037700 [exp] 132 / 2e-31 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2) Potri.005G225400 [exp] 131 / 2e-31 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.008G035700 [exp] 126 / 4e-30 AT3G54850 821 / 0.0 plant U-box 14 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015801 [exp] 1139 / 0 AT1G24330 1027 / 0.0 ARM repeat superfamily protein (.1) Lus10037005 [exp] 1133 / 0 AT1G24330 1029 / 0.0 ARM repeat superfamily protein (.1) Lus10006427 [exp] 1100 / 0 AT1G24330 993 / 0.0 ARM repeat superfamily protein (.1) Lus10011370 [exp] 1087 / 0 AT1G24330 1000 / 0.0 ARM repeat superfamily protein (.1) Lus10041754 [exp] 278 / 4e-82 AT4G36550 404 / 6e-131 ARM repeat superfamily protein (.1) Lus10028307 [exp] 272 / 5e-80 AT4G36550 417 / 1e-135 ARM repeat superfamily protein (.1) Lus10007511 [exp] 167 / 4e-43 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10040834 [exp] 156 / 1e-39 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10016565 [exp] 156 / 1e-39 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10017444 [exp] 150 / 9e-38 AT3G46510 381 / 2e-123 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.010G058000.3 pacid=42799142 polypeptide=Potri.010G058000.3.p locus=Potri.010G058000 ID=Potri.010G058000.3.v4.1 annot-version=v4.1 ATGGATATTACTGAGGTTGAAGAAAATTTGTTTGCAGCAAGCGATGCCAAGCTGCATGGAGAAATGTGCAAGGAACTCTCTGTAATTTATTGCAAAATCC TGTCCATTTTCCCTTCATTGGAAGCTGCAAGACCTAGGAGTAAATCTGGCATTCAAGCATTATGTTCGATGCATATAGCCCTTGAGAAAGCCAAGAATGT TCTCCGGCATTGCTCAGAATGTAGTAAGCTTTACTTGGCTATAACTGGAGATTCTGTCCTTTTAAAATTTGAAAAGGCAAGATCTGCTCTTGTAGATAGT CTTAGGCGTGTTGAAGATATTGTTCCACAATCAATTGGATGCGAGATTTTGGAGATTGTAAGTGAACTCGAGGGTACTGTATTCTCTCTTGATCCGTTAG AGAAGCAAGTTGGTGATGAGATAATTGTATTGCTTCAGCAGGGGAGAAAATTCGACAACTGTAATGACACTAATGAGCTAGAATCATTTCATGAGGCTGC TACTAAACTTGGTATTACCTCTTCTAGAGCAGCTCTTACAGAGAGAAGAGCTCTTAAGAAACTTATAGAAAGAGCTCGTGTGGAGGAAGACAAGCGGAAG GAATCAATTGTTGCTTATCTCTTACATCTCATGAGGAAATATTCCAAGCTATTTAGAAGTGACCTTACAGATGACAATGATTCACAGGGTTCAGCACCTT GTTCACCCACTGTTGAGGGTTCTTTTGAAGATGGAGGCCCTGGTGGTGATGGCCATGCCTTTGAGCGACATTTATCAAAGCTTAGTTCATTAAACTTCAA GCCAAACTTTAGGAAATCTGGGCAAATGCCTCTTCCACCTGAAGAATTGAGGTGTCCTATATCATTGCACCTGATGTATGATCCAGTCATCATTGCTTCT GGACAAACGTATGAAAGGATCTGCATTGAGAAATGGTTCAGTGATGGGCATGACACTTGTCCAAAGACTCAACAAAAGCTTTCTCATCTCTGCTTGACTC CTAATTATTGTGTCAAGGGTCTTGTTGCTAGTTGGTGCGAACAGAATGGAGTCCCAGCACCTGATGGTCCACCAGAGTCTCTTGACCTCAACTATTGGAG GCTCGCAATGTCTGAGCTTGACTCTGCAAATTCAAGATCTGTGGAGATTGTCGGTTCTGGTAAGTTGAAAGGGGTAAAGGTAATTCCTTTGGAGGGGAGT GGTCTCATTGAGGAGGCAGAAGAAACTGAAACTGAAAATTTATCACCGCAACAGGAAGATTCTGTTCCAGAAGATGACTTTGAGGATAATGTATTTGAAA GATATCAGAATTTTCTGACCATCTTGAATAGTGACGAAGACTTGAAGAAAAAATGCAAAATAGTAGAACAAGTGAGGCTTCTTTTGAAGGATGATGAGGA GGCCAGGATTTTTATGGGGGCCAATGGGTTTGTTGAAGCACTATTGCAGTTTCTAGAGTCAGCTGTGCATGCTAGGAATCCAATGGCCGAGGAAATTGGA GCAATGGCTCTTTTCAACCTTGCCGTCAACAATAACAGAAATAAGGAAATGATGTTGGCTTCTGGTGTTATCTCATTGTTGGAGGATATGATTTCCAACT CTGACTCTGATGGATCAGCAACAGCTCTCTATCTAAATCTCTCCTGCCTTGAAGAAGCGAAGTCCATCATTGGTTCAAGTCATGCTGTGCCTTTTTTAGT CCAAATCCTTCAAGGTGAAACTGGAGCGCAATGCAAGCTTGATGCCCTTCATGCCCTCTATAATCTCTCCTCCCACCCCACCAATATTCCGAATCTCCTT TCAGCTGGCATCATCAGTGGCCTCCAATCCGTTCTTGCAGTCCCTGGTGATCATGCATGGATAGAAAAATCTATAGCAGTGCTGATAAATTTAGCTTGTA GTCAATCAGCAAAAGATGAAATGCTGTCTGCCTCTGGCCTTATTAGTGGGCTAGCGACTATATTAGACACTGGCGAACCCATAGAGCAGGAGCAGGCTGT TGCTTGCCTTTACATTTTGTGCAATGGGAGTGAGAAGGGTAGTCAATTGGTCCTACAAGAAGGAGTTATACCTGCGCTGGTCTCAATCTCGGTGAATGGG ACCACAAGAGGGAAAGAGAAAGCGCAGAAACTTCTGATGCTGTTTCGGGAGCAGCGGCAGCGAGATCAACCATCTGCTGAGGTGCACTTTCAGCGAGATC AATCATCTGCTGAGGTGCGCTTTCAGCGAATTGAAAGTAGTTCCATGTCCATGCCTGCTCCTGAAACAAAGCCGCTATGCAAATCTGTCTCAAGAAGAAA GATGGGGAAAGCTATAAGCGTTTTTTGGAAGAGCAAGAGCTACTCAGTTTACCAGTGTTAA
AA sequence Show only first row Show all	>Potri.010G058000.3 pacid=42799142 polypeptide=Potri.010G058000.3.p locus=Potri.010G058000 ID=Potri.010G058000.3.v4.1 annot-version=v4.1 MDITEVEENLFAASDAKLHGEMCKELSVIYCKILSIFPSLEAARPRSKSGIQALCSMHIALEKAKNVLRHCSECSKLYLAITGDSVLLKFEKARSALVDS LRRVEDIVPQSIGCEILEIVSELEGTVFSLDPLEKQVGDEIIVLLQQGRKFDNCNDTNELESFHEAATKLGITSSRAALTERRALKKLIERARVEEDKRK ESIVAYLLHLMRKYSKLFRSDLTDDNDSQGSAPCSPTVEGSFEDGGPGGDGHAFERHLSKLSSLNFKPNFRKSGQMPLPPEELRCPISLHLMYDPVIIAS GQTYERICIEKWFSDGHDTCPKTQQKLSHLCLTPNYCVKGLVASWCEQNGVPAPDGPPESLDLNYWRLAMSELDSANSRSVEIVGSGKLKGVKVIPLEGS GLIEEAEETETENLSPQQEDSVPEDDFEDNVFERYQNFLTILNSDEDLKKKCKIVEQVRLLLKDDEEARIFMGANGFVEALLQFLESAVHARNPMAEEIG AMALFNLAVNNNRNKEMMLASGVISLLEDMISNSDSDGSATALYLNLSCLEEAKSIIGSSHAVPFLVQILQGETGAQCKLDALHALYNLSSHPTNIPNLL SAGIISGLQSVLAVPGDHAWIEKSIAVLINLACSQSAKDEMLSASGLISGLATILDTGEPIEQEQAVACLYILCNGSEKGSQLVLQEGVIPALVSISVNG TTRGKEKAQKLLMLFREQRQRDQPSAEVHFQRDQSSAEVRFQRIESSSMSMPAPETKPLCKSVSRRKMGKAISVFWKSKSYSVYQC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24330			ARM repeat superfamily protein...		Potri.010G058000 [exp]	0	1
					Potri.012G052501 [exp]	6.32	0.6388
AT5G09850			Transcription elongation facto...		Potri.001G307600 [exp]	8.48	0.6405
AT5G05800			unknown protein		Potri.006G116400 [exp]	10.77	0.6211
AT3G63220			Galactose oxidase/kelch repeat...		Potri.002G050600 [exp]	13.74	0.5751
AT1G13790		FDM4	factor of DNA methylation 4, X...		Potri.010G184800 [exp]	25.98	0.5861
AT3G27870			ATPase E1-E2 type family prote...		Potri.001G349100 [exp]	28.35	0.5767
AT1G33270			Acyl transferase/acyl hydrolas...		Potri.003G020800 [exp]	29.66	0.5611
AT5G57110		AT-ACA8, ACA8	"AUTOINHIBITED CA2+ -ATPASE, I...		Potri.018G139900 [exp]	43.74	0.5310
AT3G09110			Protein of unknown function (D...		Potri.010G210800 [exp]	47.49	0.5715
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Potri.015G029000 [exp]	52.00	0.5505

Compare expression of checked genes

Potri.010G058000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.