Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67510 989 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G01210 550 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G25320 514 / 1e-172 Leucine-rich repeat protein kinase family protein (.1) AT1G66830 463 / 3e-153 Leucine-rich repeat protein kinase family protein (.1) AT2G42290 454 / 6e-150 Leucine-rich repeat protein kinase family protein (.1) AT3G57830 452 / 2e-149 Leucine-rich repeat protein kinase family protein (.1) AT4G34220 359 / 3e-112 Leucine-rich repeat protein kinase family protein (.1) AT5G67280 352 / 2e-109 RLK receptor-like kinase (.1) AT2G15300 349 / 8e-109 Leucine-rich repeat protein kinase family protein (.1) AT1G68400 285 / 2e-85 leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G176900 [exp] 1213 / 0 AT1G67510 923 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G120100 [exp] 556 / 0 AT2G01210 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G124300 [exp] 546 / 0 AT2G01210 987 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G095700 [exp] 489 / 4e-163 AT2G01210 735 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G119000 [exp] 476 / 5e-158 AT2G01210 711 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G057500 [exp] 441 / 5e-145 AT3G57830 707 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G050800 [exp] 438 / 8e-144 AT3G57830 713 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G048800 [exp] 384 / 1e-121 AT2G23300 706 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G142300 [exp] 374 / 1e-117 AT4G37250 733 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015799 [exp] 953 / 0 AT1G67510 959 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037006 [exp] 905 / 0 AT1G67510 915 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10017611 [exp] 474 / 5e-157 AT1G66830 672 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033569 [exp] 469 / 7e-155 AT1G66830 665 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10043480 [exp] 454 / 2e-149 AT2G01210 879 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034108 [exp] 444 / 9e-146 AT2G01210 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021022 [exp] 405 / 2e-131 AT3G57830 639 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019315 [exp] 338 / 1e-104 AT4G37250 728 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011509 [exp] 311 / 1e-94 AT4G37250 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023830 [exp] 295 / 3e-93 AT3G57830 382 / 7e-129 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.010G058200.1 pacid=42799158 polypeptide=Potri.010G058200.1.p locus=Potri.010G058200 ID=Potri.010G058200.1.v4.1 annot-version=v4.1 ATGAGACCAAACTCTCTAATCAGAAAGCACTTGCGTCATTGCTTTTCTTCTACTCCCCTCGGAAGTCCTTTCTCAGGTGGACCCCATTTTAATCAAAATC TCGTCTTTCTCAAGTCTCTTCCTCTCATAAATCTCTCACTCCCAACCACCTCCACACCCTCCAGCATCACTTGCCTTTCTTTTCCTTCTTATAGTTTCCA CTGTAAGTATATGCCACTCTCTCATTTTACTCCTCTCCGAAACAAAAACACCGTGATGAAGAGAAACCTCTCGTTAACGCTGCTCTTTCTCTTCTTTCAC TTCCTATTCAGCACCAAACCCAGCCACTCCCTCACAGCTGATGGCTTATCCCTCCTGTCCTTAAAATCAGCCGTTGATCAAAGTTCTGCTGGCTCTGCTT TCTCTGACTGGAACGAAGATGACCAAAATCCATGTCACTGGACTGGCATTTCCTGCATGAACATAACCGGGTTACCGGACCCTCGTGTTGTTGGCATTGC AATCTCCGGCAAGAATCTCCGCGGTTACATTCCATCCGAGCTTGGCACCTTAATTTATCTTCGGAGACTTAATCTCCACAACAACAACTTCTACGGTTCA ATACCTGACCAGCTGCTTAACGCTACTTCACTTCACAGTCTTTTTCTCTACGGTAACAATCTTTCTGGTTCTCTCCCTCCTTTCATCTGTAACCTCCCTC GTCTTCAAAATCTTGACCTTTCCAACAACTCGCTGTCGGGTTCTTTGCCTCAAAATTTAAATAGCTGCAAGCAGTTGCAGAGGTTGATCCTAGCGAAAAA TAAATTCTCCGGTCCAATTCCAGCTGGGATTTGGCCTGAATTGGATAATTTAATGCAGCTTGATCTTTCTGCTAATGATTTCAATGGATCCATTCCTAAC GATATGGGAGAGCTTAAGTCTTTGTCCAATACTTTAAATCTTTCTTTCAATCATTTATCGGGTAGGATTCCGAAATCACTGGGAAATTTGCCTGTTACTG TGAGTTTTGATCTGCGAAACAACAATTTCAGCGGCGAGATACCTCAAACAGGGTCTTTTGCTAACCAAGGACCGACTGCTTTCCTCAGCAATCCTTTGCT TTGCGGGTTTCCTCTTCAGAAATCTTGCAAGGACCCCGCACATAGCTCGTCTGAAACTCAGAATTCAGCACCGGTTTCTGATAACAGTCCTAGAAAAGGA TTAAGTCCCGGTTTGATAATATTAATCTCAGTAGCTGACGCAGCTGGTGTGGCGTTTCTTGGTCTAGTTATAGTTTATATTTACTGGAAAAAGAAGGATG ATTCTAATGGTTGTAGCTGCGCTGGGAAAAGCAAATTTGGTGGCAATGAGAAATCACACTCGTGTTCACTATGTTATTGTGGTAATGGGCTTCGAAACGA TGACTCTGAATTGGAAGATCTGGAAAAAGTAGAAAGAGGGAAGCCGGAAGGAGAGCTGGTGGCGATCGATAAAGGTTTTACTTTTGAGCTTGATGAATTG CTAAGAGCATCTGCTTATGTGTTGGGGAAGAGTGGGTTGGGGATAGTGTATAAAGTGGTGCTCGGAAATGGCATTCCGGTGGCGGTGAGGAGGCTTGGCG AGGGAGGAGAGCAGAGGTACAAAGAGTTTGTAACGGAGGCGCAGGCTATTGGGAAGGTTAAGCATCCAAATGTTGTCAAGTTGAGAGCTTATTACTGGGC TCCAGATGAAAAGCTTCTCATCAGTGATTTCATCTCCAATGGCAACTTGGCTAATGCTCTTCGAGGGAAAAATGGTCAGCCTTCAACAAGTCTGTCATGG TCAACCAGGCTGAGAATTGCCAAGGGGACAGCCAGGGGCTTAGCCTACCTTCACGAATGCAGCCCGAGAAAATTTGTCCACGGAGACATCAAGCCATCTA ATATTCTCCTCGACAACGAATTCCAACCTTACATTTCTGATTTTGGCCTCAACCGACTGATCAGCATCACTGGCAACAATCCCTCCTCTTCGGGCGGCTT TATGGGCGGAGCACTCCCTTACTTAAAATCAGCTCAAACAGAGCGAACAAACAACTACCGTGCTCCAGAGGCTCGTGTTTCGGGCAACAGACCTACCCAA AAATGGGATGTGTATTCATTTGGAATTGTTTTGCTCGAGTTGCTTACTGGAAAATCTCCTGAGCTTTCACCAACCACGTCCACTTCGATAGAAATTCCAG ACCTGGTGAGATGGGTGAGAAAGGGATTTGCAGATGAAAACCCTTTATCAGACATGGTTGATTCAATGTTGCTCCAAGAAGTACATGCAAAAAAGGAGGT GCTAGCGGTTTTTCATGTTGCTCTTGCTTGCACCGAAGCCGACTCTGAGGTTCGCCCTAGGATGAAAATTGTATCTGAAAATCTTGAAAGGATCGGAACA TAG
AA sequence Show only first row Show all	>Potri.010G058200.1 pacid=42799158 polypeptide=Potri.010G058200.1.p locus=Potri.010G058200 ID=Potri.010G058200.1.v4.1 annot-version=v4.1 MRPNSLIRKHLRHCFSSTPLGSPFSGGPHFNQNLVFLKSLPLINLSLPTTSTPSSITCLSFPSYSFHCKYMPLSHFTPLRNKNTVMKRNLSLTLLFLFFH FLFSTKPSHSLTADGLSLLSLKSAVDQSSAGSAFSDWNEDDQNPCHWTGISCMNITGLPDPRVVGIAISGKNLRGYIPSELGTLIYLRRLNLHNNNFYGS IPDQLLNATSLHSLFLYGNNLSGSLPPFICNLPRLQNLDLSNNSLSGSLPQNLNSCKQLQRLILAKNKFSGPIPAGIWPELDNLMQLDLSANDFNGSIPN DMGELKSLSNTLNLSFNHLSGRIPKSLGNLPVTVSFDLRNNNFSGEIPQTGSFANQGPTAFLSNPLLCGFPLQKSCKDPAHSSSETQNSAPVSDNSPRKG LSPGLIILISVADAAGVAFLGLVIVYIYWKKKDDSNGCSCAGKSKFGGNEKSHSCSLCYCGNGLRNDDSELEDLEKVERGKPEGELVAIDKGFTFELDEL LRASAYVLGKSGLGIVYKVVLGNGIPVAVRRLGEGGEQRYKEFVTEAQAIGKVKHPNVVKLRAYYWAPDEKLLISDFISNGNLANALRGKNGQPSTSLSW STRLRIAKGTARGLAYLHECSPRKFVHGDIKPSNILLDNEFQPYISDFGLNRLISITGNNPSSSGGFMGGALPYLKSAQTERTNNYRAPEARVSGNRPTQ KWDVYSFGIVLLELLTGKSPELSPTTSTSIEIPDLVRWVRKGFADENPLSDMVDSMLLQEVHAKKEVLAVFHVALACTEADSEVRPRMKIVSENLERIGT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67510			Leucine-rich repeat protein ki...		Potri.010G058200 [exp]	0	1
AT1G63430			Leucine-rich repeat protein ki...		Potri.003G124800 [exp]	1.41	0.9461
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Potri.002G146500 [exp]	3.46	0.9250
AT2G24230			Leucine-rich repeat protein ki...		Potri.018G107400 [exp]	3.87	0.9170
AT3G24840			Sec14p-like phosphatidylinosit...		Potri.002G243000 [exp]	4.47	0.9396
AT1G50500		ATVPS53, HIT1	HEAT-INTOLERANT 1, ARABIDOPSIS...		Potri.016G023000 [exp]	5.29	0.9059
AT2G40120			Protein kinase superfamily pro...		Potri.010G188400 [exp]	5.74	0.9277
AT1G66810	C3HZnF	AtC3H14	Zinc finger C-x8-C-x5-C-x3-H t...		Potri.004G095100 [exp]	7.00	0.9250
AT3G56230			BTB/POZ domain-containing prot...		Potri.013G083800 [exp]	8.48	0.9267
AT5G02010		ATROPGEF7, ROPG...	RHO guanyl-nucleotide exchange...		Potri.016G104400 [exp]	9.16	0.9170
AT2G21300			ATP binding microtubule motor ...		Potri.004G162800 [exp]	10.00	0.9118

Compare expression of checked genes

Potri.010G058200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.