Plant FIBer expression Database

Potri.010G058700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G01860 83 / 4e-19 unknown protein
AT3G27210 67 / 4e-13 unknown protein
AT5G40860 54 / 1e-08 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G176300
[exp]
365 / 2e-129 AT3G01860 67 / 2e-13 unknown protein
Potri.001G332500
[exp]
120 / 2e-33 AT3G01860 96 / 3e-24 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041572
[exp]
108 / 1e-28 AT3G01860 77 / 1e-16 unknown protein
Lus10035217
[exp]
77 / 4e-17 AT3G27210 79 / 3e-18 unknown protein
Lus10032051
[exp]
75 / 3e-15 AT5G40870 698 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1)
Lus10011366
[exp]
48 / 1e-06 AT3G27210 39 / 0.001 unknown protein
Lus10022348
[exp]
44 / 5e-05 ND /
PFAM info
Representative CDS sequence
>Potri.010G058700.1 pacid=42799096 polypeptide=Potri.010G058700.1.p locus=Potri.010G058700 ID=Potri.010G058700.1.v4.1 annot-version=v4.1
ATGGGCAATTGTGCTTCAGTTCGTAAGAAAGCCGGCCCTGCTATGAAATTCAGTTGCCCCATTGATTCTCGAGGAAACTGTATCCATATTGAATCACCAG
TGAAGGGCAGCAGCAAAGTATACGGTGATCACTCCATGACTGAAAAACTCAATTCCAAGCCCCAGTCCTTGTCTCCAAAGCCTTGTCAAGCCAGTTTTCA
TGACATGGGTAACCAAGAGGATATGTTTTTTGATTCTCATCCCTGGATAGAGTCTGATTGTGAAGATTACCTCAGTGTCGATGGTGATTTTACTCCCTCA
CGTGGCACTACTCCTATTCACCAAGGCAGCTATATAGAAACCCCTCCACGTGAAGAATCTCTCTGTATTATCACTTCAGCCAGGTCAATAGCTGAACCTT
CTCCAGCTGATATGAAGAAGCAACTAATCGAGCTCTTTCGAGAGAACATCAGTAGCGATCTGGCTAATAACAACCAAAGTTTCCAAGACAAAGTCAATGG
CAAGCCTATAGCTGCTTACCTCTCTCCGAAATATACAAGTAGAAGTCCATATCAGTCTGCAGAAAGCTCTGTCCGCAGCAGTGAAACAACTCCACACAGA
GATTCCAAATCTGGGAAAGAGAAACCAACTCATTCTGCACACTGCTGCCTTCCAAATGTTGTGCGGAGCCTGAGCTTCACTGAGAGGAAGAGGAGGCTGA
GCCATGCCTATGGTGGTGGACAGTAA
AA sequence
>Potri.010G058700.1 pacid=42799096 polypeptide=Potri.010G058700.1.p locus=Potri.010G058700 ID=Potri.010G058700.1.v4.1 annot-version=v4.1
MGNCASVRKKAGPAMKFSCPIDSRGNCIHIESPVKGSSKVYGDHSMTEKLNSKPQSLSPKPCQASFHDMGNQEDMFFDSHPWIESDCEDYLSVDGDFTPS
RGTTPIHQGSYIETPPREESLCIITSARSIAEPSPADMKKQLIELFRENISSDLANNNQSFQDKVNGKPIAAYLSPKYTSRSPYQSAESSVRSSETTPHR
DSKSGKEKPTHSAHCCLPNVVRSLSFTERKRRLSHAYGGGQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G01860 unknown protein Potri.010G058700
[exp]
0 1
AT1G19835 Plant protein of unknown funct... Potri.002G024400
[exp]
1.00 0.9208
AT1G22460 O-fucosyltransferase family pr... Potri.002G100400
[exp]
12.64 0.7667
AT2G33385 ARPC2B actin-related protein C2B (.1.... Potri.008G170800
[exp]
13.03 0.8356
AT2G37080 RIP3 ROP interactive partner 3 (.1) Potri.016G085900
[exp]
13.34 0.8471
AT5G12870 MYB ATMYB46 myb domain protein 46 (.1) Potri.001G258700
[exp]
16.61 0.8331
AT3G12020 P-loop containing nucleoside t... Potri.006G194900
[exp]
17.43 0.8148
AT1G79620 Leucine-rich repeat protein ki... Potri.016G144100
[exp]
18.24 0.8267
AT4G22560 unknown protein Potri.001G121600
[exp]
19.79 0.8295
AT3G20860 ATNEK5 NIMA-related kinase 5 (.1) Potri.016G051900
[exp]
21.00 0.8448
AT3G08500 MYB ATMYB83 myb domain protein 83 (.1) Potri.001G267300
[exp]
23.00 0.8108

Potri.010G058700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.