Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01950 156 / 6e-40 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT2G34930 149 / 1e-37 disease resistance family protein / LRR family protein (.1) AT4G39400 147 / 5e-37 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 140 / 8e-35 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G74170 140 / 9e-35 AtRLP13 receptor like protein 13 (.1) AT2G02220 140 / 1e-34 ATPSKR1 phytosulfokin receptor 1 (.1) AT3G28890 139 / 2e-34 AtRLP43 receptor like protein 43 (.1.2) AT4G36180 134 / 7e-33 Leucine-rich receptor-like protein kinase family protein (.1) AT1G07390 134 / 1e-32 AtRLP1 receptor like protein 1 (.1.2.3) AT4G04220 133 / 1e-32 AtRLP46 receptor like protein 46 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G196766 [exp] 169 / 1e-45 AT2G34930 257 / 7e-76 disease resistance family protein / LRR family protein (.1) Potri.001G262800 [exp] 171 / 5e-45 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1) Potri.001G043800 [exp] 167 / 7e-44 AT2G34930 383 / 7e-119 disease resistance family protein / LRR family protein (.1) Potri.015G024500 [exp] 162 / 5e-42 AT2G34930 315 / 7e-92 disease resistance family protein / LRR family protein (.1) Potri.015G025100 [exp] 162 / 6e-42 AT2G34930 361 / 3e-109 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 161 / 8e-42 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.015G025300 [exp] 161 / 9e-42 AT2G34930 314 / 1e-91 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 161 / 1e-41 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 158 / 1e-40 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016339 [exp] 184 / 2e-49 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10016326 [exp] 182 / 7e-49 AT2G34930 456 / 2e-145 disease resistance family protein / LRR family protein (.1) Lus10002743 [exp] 179 / 1e-47 AT2G34930 476 / 6e-153 disease resistance family protein / LRR family protein (.1) Lus10016342 [exp] 178 / 2e-47 AT2G34930 478 / 4e-154 disease resistance family protein / LRR family protein (.1) Lus10024737 [exp] 178 / 2e-47 AT2G34930 920 / 0.0 disease resistance family protein / LRR family protein (.1) Lus10002755 [exp] 176 / 1e-46 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 173 / 1e-45 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10006948 [exp] 171 / 5e-45 AT2G34930 637 / 0.0 disease resistance family protein / LRR family protein (.1) Lus10039514 [exp] 171 / 6e-45 AT2G34930 447 / 6e-142 disease resistance family protein / LRR family protein (.1) Lus10016337 [exp] 169 / 3e-44 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Potri.010G058850.1 pacid=42797962 polypeptide=Potri.010G058850.1.p locus=Potri.010G058850 ID=Potri.010G058850.1.v4.1 annot-version=v4.1 ATGGCGAAAGAGAGAACCTGCTTCCAGCTTTCATTTCTGATTTTCCTTTCCTTGTTTTCAAAGTTTGTTTCCCTCGAAGCTACTAAACCGAGTCCCAATT CCAGCATTTCCAACGCTGCCGGATGCGTTGAGCTTGAGAGGAAAGCACTTCTTAGGTTCAAACAAGGTCTTAAAGACAGGACATGCTGCAGCGAGCAGAC AGGACATGTCATTAAGCTTCATCTTCAAAATCCATACAATTCTACCTTTATTGATCCTGGTGATTCAACAGAGTTAGCGGGTTTTAAGTTTTCATGCTTA AGCGGTAAGATAAGCCTTTCTTTGCTTGAGCTCAAGTACTTAAATCACCTGGATTTAAGTTGGAACGATTTCCAAGGAAAAACAATCCCAGAATACATTG GTTCACTCAGTGAGTTGAGTTATCTTGATCTCTCTGGTGCATCGTTTTCTGGACTAGTTCCCCCTCATCTTGGAAATCTGTCAAACCTCCGTTATCTAAA TCTGTATTCTGATTCCTACCAATCATCTGTTATTGATAATCTAAGAAGAAACTTTCCTGATTCTCTTCCAACAACGAATTTAACTGCTCTTCGCATTTTT CGCCTTGGATATAATAATTTCAGCAATTTTTTGCCTCGCTGGTTGTCCAATATTAGTACTCTCGAGGTCCTCGACCTTAGTATTTCTAGAATGAAAGGCC CCATAGACCATATCTCCTGGAGAAAACTTTGCAAACTGCAGCCTTTATATCTGTCAAATAATGATATTAGTGGTGAGATAGTTGATCTTGTTGCGGGTCT GTCTGGATGTGGTAATAAATTGAGTGGACAGATACCTGACTCAATTGGACATTTCAAGCATTTGAGATCTCTATATCTTCAGAGCAACTCCTTTTCCGGT TCAATTCCATCATCTATTGGAAGCTTGAATGATTTAGAGACATTGGATTTGAGTTCCAATGCAATAAGCGGGACGATCCCTGATAGCATTGGACAGTTAT CAAAAGACCTAAAGAATTTGGGAACACTTGTTCTTTCAAATAATCTTTTGTCTGGAAATATCAATATTCCTTGGGAGGAAATGAGTTTGAGTCACCTTGA CCTGTCCAGAAACAATCTGCAACAACTATTCTGGAGAACTCTCCCCGTCCTTACAAAACTGCACAGGTTGTCTGGAAGTATAACAGAGTGGGTTGGGGAT AATCTATCTATACTGTCAGCGTTAGCACTCAGAGGCAGCATGTTCAGTGGAAACATTCCTGGGCAACTATGTCGCCTCCCTCATCTCCATATCTTAGATC TAGCTCAAAATCATTTATCCAGTTTCATTCCAACGTGTCTTGGTAATTTAAGTGGCTTGCAAGCTCCATCTTTTTATGAGCAGGATCCTCCAGACTTCAC TGTTTCCTATCGTCAGAGTATGGATTTGATCGTGAAGGGAAGACAACTTGAGTACAACCTCACACTTGGCATTGTAAATGTCTTAGACCTGTCAAGCAAT AACTTAAAGGGAGAAATCCCAGAAGAGATAATTAATCTCACATACCTGGGTACCTTGAATTTGTCTTGGAATCAATTGACTGGAAAGATTCCTGACAAGA TTGGAAGCCTACAACGGTTAGAAACTCTTGATCTCTCAAATAACCATCTTTCAGGTCCGATTCCTCCAAGCATGTCTTCCATGACTTTCTTGAATCACTT GAATTTGTCATACACTAACTTATGA
AA sequence Show only first row Show all	>Potri.010G058850.1 pacid=42797962 polypeptide=Potri.010G058850.1.p locus=Potri.010G058850 ID=Potri.010G058850.1.v4.1 annot-version=v4.1 MAKERTCFQLSFLIFLSLFSKFVSLEATKPSPNSSISNAAGCVELERKALLRFKQGLKDRTCCSEQTGHVIKLHLQNPYNSTFIDPGDSTELAGFKFSCL SGKISLSLLELKYLNHLDLSWNDFQGKTIPEYIGSLSELSYLDLSGASFSGLVPPHLGNLSNLRYLNLYSDSYQSSVIDNLRRNFPDSLPTTNLTALRIF RLGYNNFSNFLPRWLSNISTLEVLDLSISRMKGPIDHISWRKLCKLQPLYLSNNDISGEIVDLVAGLSGCGNKLSGQIPDSIGHFKHLRSLYLQSNSFSG SIPSSIGSLNDLETLDLSSNAISGTIPDSIGQLSKDLKNLGTLVLSNNLLSGNINIPWEEMSLSHLDLSRNNLQQLFWRTLPVLTKLHRLSGSITEWVGD NLSILSALALRGSMFSGNIPGQLCRLPHLHILDLAQNHLSSFIPTCLGNLSGLQAPSFYEQDPPDFTVSYRQSMDLIVKGRQLEYNLTLGIVNVLDLSSN NLKGEIPEEIINLTYLGTLNLSWNQLTGKIPDKIGSLQRLETLDLSNNHLSGPIPPSMSSMTFLNHLNLSYTNL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01950		VH1, BRL2	VASCULAR HIGHWAY 1, BRI1-like ...		Potri.010G058850 [exp]	0	1
					Potri.010G137500 [exp]	19.39	0.9030
AT5G62490		ATHVA22B	ARABIDOPSIS THALIANA HVA22 HOM...		Potri.014G148600 [exp]	25.15	0.8739
					Potri.004G216400 [exp]	28.49	0.9329
AT4G16295		SPH1	S-protein homologue 1 (.1)		Potri.002G252500 [exp]	30.13	0.8535
AT3G14260			Protein of unknown function (D...		Potri.003G125300 [exp]	31.62	0.9327
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Potri.018G033600 [exp]	34.11	0.9325	GA3ox4,Pt-WGA3.2
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Potri.004G115500 [exp]	55.11	0.9272
					Potri.001G169351 [exp]	77.94	0.9272
					Potri.001G196900 [exp]	79.32	0.9272
					Potri.001G276804 [exp]	80.68	0.9272

Compare expression of checked genes

Potri.010G058850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.