Plant FIBer expression Database

Pt-GCS1.3 (Potri.010G059000) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-GCS1.3
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G67490 1134 / 0 KNOPF, KNF, GCS1 KNOPF, glucosidase 1 (.1.2)
AT1G24320 1055 / 0 Six-hairpin glycosidases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037009
[exp]
1181 / 0 AT1G67490 1078 / 0.0 KNOPF, glucosidase 1 (.1.2)
Lus10015796
[exp]
1128 / 0 AT1G67490 1014 / 0.0 KNOPF, glucosidase 1 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0059 6_Hairpin PF03200 Glyco_hydro_63 Glycosyl hydrolase family 63 C-terminal domain
CL0059 PF16923 Glyco_hydro_63N Glycosyl hydrolase family 63 N-terminal domain
Representative CDS sequence
>Potri.010G059000.1 pacid=42798780 polypeptide=Potri.010G059000.1.p locus=Potri.010G059000 ID=Potri.010G059000.1.v4.1 annot-version=v4.1
ATGACTCCAGGCAGTAGCCGGAGGAATGCGCGAAGCAGAACGTCGTCCTCCACCGAACCAAACGACGGAGGCGACAGTTCTTTTGGAAACACAAAACCTA
GACTGAGAGATAGAAATAAAAACCAGAATTCAATTCGGATTTTGAACGTTGATATCAAAATCATGCTAGGAATTAGCGTATTGGCTTTCTTCGTAATTTT
TTTGTTGATTAATAATATTATTATAAAGCCTGCTGGAAAAGCACTAAGACCTAGGGTTATCACTCCATTTCCTTCTCCTAAACTCATGGACCTTCCTCAA
TTTCAAGGAGAGCACAGAGAGAGCTTATATTGGGGAACTTATCGTCCTCATGTTTATTTTGGAATTCGCGCAAGGACTCCTCGGTCTTTGATAGCTGGAT
TGATGTGGATTGGTGTGAAGGATGGGATGTATCATATGAGACATGTGTGTCAAGACTCTGACGGGCTTAACACGTATGGCTGGACGCAGCATAATGGTCG
TGATTTTGGACATCAGGTGTTGGTTGATCAGGGATTGAAGTTAGCTACGAGTTTCTTGAAATCCAAGAGTGAAGGAAGTGGATATGGAGGTGATTGGGCC
GTTCAAATTGATGTGCAAACTGATAAATCCGAGTGGGATAATGAAATGCTGAGACATGGGCATTTGTTCTTCTATTTGGCTGATGAAAGTGGACATGTCC
TAAATTTGGCGGGAGATACCTTAGACATCGATAAGAATTCTCTTTTAGCATCAGGTTCACGATCTGATATTGGGGATTGGCAGCTACATTTGGAATCCAA
GGATGTTTTGGAGCTCCACTATTCTGGTTTCAGGACACCTCATATTCACAATTTATCTGATCTTGTCCAGCACAATCTCGGAGCCCAAGCAAGAGAGTTT
GGCCAACTGCTTCTATCTGACTCGTCTGAAGATTCTCCAAACATTCTAGTTTTTCAGATTTCTGCAAGTATTCCTTTCAAAGCAGATATTGCTTTTGTAT
CTGGAACCGAAGTGAAAAATTCAAAAGTAGAAGAACGTGTGAGCAGGCTTACAGGTGCCTCGCTGACAAGTTTATTACAAGATAGGAAAACAGAGTTTGA
TATCAAATTTCAGCGGTGCTTTAATGTTGCTGACAAGCTTGAACCTGAATCCACAATTGTTGGTAAGGCTGCTATTGCTAATATGTTGGGAGGCATTGGC
TACTTTTATGGTCAATCAAAGATTTCATTCCCTGAAAATTCTAATCTTAGAGATAATTTTATTTCATATTGGCCAGCTGAGCTGTATACAGCTGTTCCTA
GCCGACCATTCTTTCCAAGGGGATTTTTATGGGATGAAGGTTTTCATCAACTGTTGATCTGGCGTTGGGATATCCATATTTGTTTGGATATTATTGGTCA
CTGGTTAGATTTAATGAACATAGATGGATGGATTCCACGTGAGCAGATTTTGGGTTCTGAAGCTCTAAGTAAGGTTCCAGAGGAATTTGTTGTTCAGTAT
CCATCTAATGGAAATCCACCCACCCTATTTTTGGTTATTCGTGATCTACTTGATGGGATGGAGAAAAATAAGTTCACTGCCACTGAAAGAAATGGGATCA
CTTCCTTCCTTGAACGGGCTTTTGTTCGCTTGGAAGCTTGGTTCCAGTGGTACAACACAACGCAGAAAGGGAAAGAGATGGGCAGCTATTATTGGCATGG
GAGAGACAACAAAGTAACTCGGGAACTAAACCCAAAGACACTGTCCTCTGGGCTGGATGATTATCCTCGTGCTTCACACCCAAGTGACGAAGAACGACAC
TTGGATCTTAGGTGTTGGATGCTTCTCGCTGCGAATTGCATGCAGTCCATTACTCAGTTGTTTAAGAAGGATAATAAGCCTGAAAAGGAATATGGCTCAA
CAGCTAAGCTACTTTCAGATTTTGACATGCTGAATCAGATGCACCTTGATCCTTTGGTTGGAGCTTATTTTGATTTTGGGAATCATACAGAAAAGGTTCG
TTTAAGTTGGAAAGAGACAGGGGTGGGAACTCGAGAGCTTGTTCGTGATGTAATAGGAAGGCCAGTATCAAGACTTGTTCCTCATATTGGTTATGTCAGC
CTTTTTCCATTCATGGGGAAAATTATTCCATCTGATTCGTGGATTCTGGAAAAACAGCTTGACCTCATTGCAAACAGTACCGTTTTCTGGACAGACTATG
GACTCCGTTCTCTTTCCAAAACAAGTTCCATGTACATGAAGCGCAACACAGAGCATGACCCACCTTACTGGAGAGGCCCAATTTGGATGAACATGAATTA
CATGATTCTATCTGCACTCTACCACTATTCCAAAGAGAGTGGACCGTATAGTGACAGAGCCAGAGTAATCTATGATGACTTGAGGGGTAATTTGATTAGG
AATGTGGTTCGCAACTATCACCAAACTGGGTTTCTGTGGGAACAGTATGACCAGAAGAAGGGTAAAGGAAAGGGTGCACGCCTGTTTACTGGCTGGACAT
CACTTGTCCTCCTAATCATGGCAGAAGCTTATACCTAA
AA sequence
>Potri.010G059000.1 pacid=42798780 polypeptide=Potri.010G059000.1.p locus=Potri.010G059000 ID=Potri.010G059000.1.v4.1 annot-version=v4.1
MTPGSSRRNARSRTSSSTEPNDGGDSSFGNTKPRLRDRNKNQNSIRILNVDIKIMLGISVLAFFVIFLLINNIIIKPAGKALRPRVITPFPSPKLMDLPQ
FQGEHRESLYWGTYRPHVYFGIRARTPRSLIAGLMWIGVKDGMYHMRHVCQDSDGLNTYGWTQHNGRDFGHQVLVDQGLKLATSFLKSKSEGSGYGGDWA
VQIDVQTDKSEWDNEMLRHGHLFFYLADESGHVLNLAGDTLDIDKNSLLASGSRSDIGDWQLHLESKDVLELHYSGFRTPHIHNLSDLVQHNLGAQAREF
GQLLLSDSSEDSPNILVFQISASIPFKADIAFVSGTEVKNSKVEERVSRLTGASLTSLLQDRKTEFDIKFQRCFNVADKLEPESTIVGKAAIANMLGGIG
YFYGQSKISFPENSNLRDNFISYWPAELYTAVPSRPFFPRGFLWDEGFHQLLIWRWDIHICLDIIGHWLDLMNIDGWIPREQILGSEALSKVPEEFVVQY
PSNGNPPTLFLVIRDLLDGMEKNKFTATERNGITSFLERAFVRLEAWFQWYNTTQKGKEMGSYYWHGRDNKVTRELNPKTLSSGLDDYPRASHPSDEERH
LDLRCWMLLAANCMQSITQLFKKDNKPEKEYGSTAKLLSDFDMLNQMHLDPLVGAYFDFGNHTEKVRLSWKETGVGTRELVRDVIGRPVSRLVPHIGYVS
LFPFMGKIIPSDSWILEKQLDLIANSTVFWTDYGLRSLSKTSSMYMKRNTEHDPPYWRGPIWMNMNYMILSALYHYSKESGPYSDRARVIYDDLRGNLIR
NVVRNYHQTGFLWEQYDQKKGKGKGARLFTGWTSLVLLIMAEAYT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G67490 KNOPF, KNF, GCS... KNOPF, glucosidase 1 (.1.2) Potri.010G059000
[exp]
0 1 Pt-GCS1.3
AT2G30110 ATUBA1, MOS5 MODIFIER OF SNC1 5, ubiquitin-... Potri.001G280600
[exp]
16.58 0.6406 Pt-ATUBA1.5
AT1G48430 Dihydroxyacetone kinase (.1) Potri.012G041100
[exp]
19.74 0.6746
AT3G51010 unknown protein Potri.007G018300
[exp]
21.21 0.7032
AT1G29150 RPN6, ATS9 REGULATORY PARTICLE NON-ATPASE... Potri.013G020300
[exp]
45.59 0.6568 ATS9.2
AT2G01720 Ribophorin I (.1) Potri.010G223500
[exp]
48.55 0.6715
AT2G02390 GST18, ATGSTZ1 GLUTATHIONE S-TRANSFERASE 18, ... Potri.014G069600
[exp]
53.24 0.6207
AT5G56090 COX15 cytochrome c oxidase 15 (.1) Potri.011G166800
[exp]
57.96 0.6429
AT1G13410 Tetratricopeptide repeat (TPR)... Potri.010G123901
[exp]
60.86 0.6777
AT5G61340 unknown protein Potri.004G102800
[exp]
76.31 0.6186
AT2G18465 Chaperone DnaJ-domain superfam... Potri.019G010000
[exp]
87.51 0.6334

Potri.010G059000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.