Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24310 447 / 2e-157 unknown protein AT3G32904 44 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G176100 [exp] 472 / 4e-167 AT1G24310 392 / 9e-136 unknown protein Potri.011G148800 [exp] 61 / 8e-10 AT1G10390 606 / 0.0 Nucleoporin autopeptidase (.1.2) Potri.001G453200 [exp] 48 / 1e-05 AT1G10390 684 / 0.0 Nucleoporin autopeptidase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037010 [exp] 449 / 1e-157 AT1G24310 478 / 2e-169 unknown protein Lus10015795 [exp] 375 / 8e-129 AT1G24310 404 / 2e-140 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13874 [poplar] [flax] Nup54 Nucleoporin complex subunit 54
Representative CDS sequence Show only first row Show all	>Potri.010G059100.1 pacid=42799698 polypeptide=Potri.010G059100.1.p locus=Potri.010G059100 ID=Potri.010G059100.1.v4.1 annot-version=v4.1 ATGTTCGGTACTCCGTCTTCCACTCCTGCCTTTGGCACGCCGTCTTCCACTCCGGCATTCGGCACCCCCTCTTCTACTCCCTTATTCGGCACTCCATCTT CCACACCAGCATTCGGCACCCCATCTTCCACACCAGCATTCGGCACTCCTTCAACGCCGGCTTTCGCTTCTGGAGGATTCGGCTCTTCTTTGTTCTCTAC TCCATTTACTTCTCAAACTCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAAACTCCGTTTTTTCAACAACCGTCTGCTACTGGTTTCGGATTT CAGCAGCAACAGCAGCAGACTCCGTTCGCTACGCCACTTCAAATGACACCGTTCCCTACTCCTCAATTGACTACTCAGATGGCTCCGGTTGCTCCTCTTC CTTTCTCTCTCGCCGATCGCGACATTCAGGCAATTGTGGATGCTTACAAGGAGGAGCCTGGGAACCCTAAGTATGCATTCAAGTATTTGCTGTTAAGTGT AACTGATCCACAGCATAGAGTGAAGCCTGCTGGTGTATCAGAAATCATGTGGGCGGAGGCTATGGCAAAGCTAGAGGGTATGGACAGTGCAGATAGAGAA CGCCTTTGGCCTCAGCTTGTTCAAGGTTTCAAAGATCTTTCTAACCGCCTGAAGCTCCAAGATGAAGTAATTGTTTCAGATGCAGAGAGATTGCGAATGA CCCAAAGCAATGTAAAAATGCTTCAAAGGCATTTTCAAGCTGAGACTCTTCCATGGATTGAAAGAATGAGACAAAAAGAGCAAAGTCTTCAGAGGCGTCT TTTAAGGGTGATGAGAATAATGGAGGCATTGGAGGGCAAGGGTTGCCGATTGCCCTTAACAAAAGGGGAAGCTGAATTGGCTGAGAAGTTAGTTGCGATA ATCAGGCAGCTAAAAGGATCTGGAGCAGAATTTTCCAGGAGAGTTCATAACCTACTCACTGTATCTCGTGTTCAAGCGAATGGAATTGGTGCCGGAGGTT CTCTTTATCTTCCAGGATCAACCAAAATACATGAAGAGAGTCTTGCTGATATGCAGGAGGTTTTACAACAGCAGACTGAAGCTATTGCAAGGCTTGGCAA TGTGTTGAAGCGGGATATTAGGGACATGGAAATTATGATGGCCGAGGACACATAA
AA sequence Show only first row Show all	>Potri.010G059100.1 pacid=42799698 polypeptide=Potri.010G059100.1.p locus=Potri.010G059100 ID=Potri.010G059100.1.v4.1 annot-version=v4.1 MFGTPSSTPAFGTPSSTPAFGTPSSTPLFGTPSSTPAFGTPSSTPAFGTPSTPAFASGGFGSSLFSTPFTSQTQQQQQQQQQQQQQTPFFQQPSATGFGF QQQQQQTPFATPLQMTPFPTPQLTTQMAPVAPLPFSLADRDIQAIVDAYKEEPGNPKYAFKYLLLSVTDPQHRVKPAGVSEIMWAEAMAKLEGMDSADRE RLWPQLVQGFKDLSNRLKLQDEVIVSDAERLRMTQSNVKMLQRHFQAETLPWIERMRQKEQSLQRRLLRVMRIMEALEGKGCRLPLTKGEAELAEKLVAI IRQLKGSGAEFSRRVHNLLTVSRVQANGIGAGGSLYLPGSTKIHEESLADMQEVLQQQTEAIARLGNVLKRDIRDMEIMMAEDT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24310			unknown protein		Potri.010G059100 [exp]	0	1
AT1G79650		AtAO1, RAD23B, ...	RADIATION SENSITIVE23B, Arabid...		Potri.001G038000 [exp]	8.77	0.6733	RAD23.1
AT1G09280			unknown protein		Potri.005G011300 [exp]	11.18	0.6165
AT2G34040			Apoptosis inhibitory protein 5...		Potri.011G062500 [exp]	25.84	0.6192
AT2G33610		CHB2, ATSWI3B	CHROMATIN REMODELING COMPLEX S...		Potri.002G004800 [exp]	28.28	0.5785	(),CHB903,Pt-SWI3.1,of
AT1G71860		ATPTP1, PTP1	protein tyrosine phosphatase 1...		Potri.013G115400 [exp]	32.31	0.5927	PTP1.1
AT1G16610		RNPS1, SR45	arginine/serine-rich 45 (.1.2....		Potri.011G143100 [exp]	45.60	0.5925	SR45.1
AT2G33820		ATMBAC1	Mitochondrial substrate carrie...		Potri.011G056000 [exp]	50.19	0.5577
AT5G18440		AtNUFIP	nuclear FMRP-interacting prote...		Potri.010G246500 [exp]	50.64	0.5886
AT5G25080			Sas10/Utp3/C1D family (.1)		Potri.006G264700 [exp]	53.44	0.5716
AT5G36950		DEGP10	DegP protease 10 (.1)		Potri.008G079900 [exp]	66.45	0.5885

Compare expression of checked genes

Potri.010G059100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.