Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G40042 119 / 7e-37 Microsomal signal peptidase 12 kDa subunit (SPC12) (.1) AT2G22425 115 / 4e-35 Microsomal signal peptidase 12 kDa subunit (SPC12) (.1), Microsomal signal peptidase 12 kDa subunit (SPC12) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G175775 [exp] 139 / 2e-44 AT2G22425 124 / 1e-38 Microsomal signal peptidase 12 kDa subunit (SPC12) (.1), Microsomal signal peptidase 12 kDa subunit (SPC12) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037014 [exp] 114 / 2e-34 AT4G40042 131 / 2e-41 Microsomal signal peptidase 12 kDa subunit (SPC12) (.1) Lus10037011 [exp] 110 / 5e-33 AT4G40042 127 / 1e-39 Microsomal signal peptidase 12 kDa subunit (SPC12) (.1) Lus10015793 [exp] 109 / 1e-32 AT4G40042 127 / 2e-39 Microsomal signal peptidase 12 kDa subunit (SPC12) (.1) Lus10011365 [exp] 68 / 1e-16 AT4G40042 75 / 2e-19 Microsomal signal peptidase 12 kDa subunit (SPC12) (.1) Lus10006422 [exp] 57 / 3e-12 AT4G40042 66 / 1e-15 Microsomal signal peptidase 12 kDa subunit (SPC12) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06645 [poplar] [flax] SPC12 Microsomal signal peptidase 12 kDa subunit (SPC12)
Representative CDS sequence Show only first row Show all	>Potri.010G059300.3 pacid=42797666 polypeptide=Potri.010G059300.3.p locus=Potri.010G059300 ID=Potri.010G059300.3.v4.1 annot-version=v4.1 ATGGATTGGCAAGGACAGAAACAAGCGGAGCTATGGATGCAGATACTGCTGTTAGTTTTCGCGGCGGTGGCTTTAGCTACAGGTTATATAATAGGATCGT TTCGAATGATGATGCTAATTTACGCCGGTGGAGTGGTTTTCACCACGCTGGTTACTGTCCCTAATTGGCCCTTCTTTAATCGCCATCCTCTCAAGTGGTT GGACCCAAGCGAAGCTGAGAAGCACCCTAAGCCACAGAAGGCTGTGGTTTCCAAGGACAAGAAGAAATCGTCCAAGAAGTAG
AA sequence Show only first row Show all	>Potri.010G059300.3 pacid=42797666 polypeptide=Potri.010G059300.3.p locus=Potri.010G059300 ID=Potri.010G059300.3.v4.1 annot-version=v4.1 MDWQGQKQAELWMQILLLVFAAVALATGYIIGSFRMMMLIYAGGVVFTTLVTVPNWPFFNRHPLKWLDPSEAEKHPKPQKAVVSKDKKKSSKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G40042			Microsomal signal peptidase 12...		Potri.010G059300 [exp]	0	1
AT2G01470		ATSEC12, STL2P	SEC12P-like 2 protein (.1)		Potri.010G111800 [exp]	3.74	0.6872
AT2G41600			Mitochondrial glycoprotein fam...		Potri.006G046350 [exp]	5.29	0.7369
AT2G35605			SWIB/MDM2 domain superfamily p...		Potri.013G070600 [exp]	5.83	0.7411
AT1G80670		RAE1	RNA export factor 1, Transduci...		Potri.001G048100 [exp]	6.63	0.7531
AT5G60230		ATSEN2, SEN2	splicing endonuclease 2 (.1.2)		Potri.009G131500 [exp]	9.64	0.7398	Pt-SEN1.2
AT5G09270			unknown protein		Potri.005G066900 [exp]	14.96	0.7135
AT5G36930			Disease resistance protein (TI...		Potri.005G003900 [exp]	15.81	0.7349
AT2G23090			Uncharacterised protein family...		Potri.001G296600 [exp]	20.32	0.7160
AT2G31305		INH3	inhibitor-3 (.1)		Potri.007G101900 [exp]	21.42	0.6814
AT1G61065			Protein of unknown function (D...		Potri.004G038700 [exp]	22.97	0.6995

Compare expression of checked genes

Potri.010G059300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.