Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60420 667 / 0 DC1 domain-containing protein (.1) AT4G31240 277 / 5e-88 protein kinase C-like zinc finger protein (.1.2) AT2G35010 44 / 7e-05 ATO1 thioredoxin O1 (.1.2) AT2G37820 43 / 0.0004 Cysteine/Histidine-rich C1 domain family protein (.1) AT1G20990 42 / 0.0007 Cysteine/Histidine-rich C1 domain family protein (.1) AT3G08710 40 / 0.0007 TRXH9, ATH9 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G059550 [exp] 1052 / 0 AT1G60420 658 / 0.0 DC1 domain-containing protein (.1) Potri.010G060200 [exp] 998 / 0 AT1G60420 679 / 0.0 DC1 domain-containing protein (.1) Potri.010G059700 [exp] 992 / 0 AT1G60420 680 / 0.0 DC1 domain-containing protein (.1) Potri.010G059600 [exp] 989 / 0 AT1G60420 666 / 0.0 DC1 domain-containing protein (.1) Potri.010G059900 [exp] 989 / 0 AT1G60420 652 / 0.0 DC1 domain-containing protein (.1) Potri.010G060100 [exp] 969 / 0 AT1G60420 654 / 0.0 DC1 domain-containing protein (.1) Potri.010G060300 [exp] 830 / 0 AT1G60420 560 / 0.0 DC1 domain-containing protein (.1) Potri.010G059800 [exp] 616 / 0 AT1G60420 390 / 1e-132 DC1 domain-containing protein (.1) Potri.008G175600 [exp] 501 / 7e-176 AT1G60420 338 / 5e-112 DC1 domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013017 [exp] 657 / 0 AT1G60420 624 / 0.0 DC1 domain-containing protein (.1) Lus10017252 [exp] 288 / 2e-91 AT1G60420 311 / 1e-100 DC1 domain-containing protein (.1) Lus10005618 [exp] 263 / 3e-82 AT1G60420 300 / 2e-96 DC1 domain-containing protein (.1) Lus10029148 [exp] 138 / 2e-38 AT1G60420 121 / 5e-33 DC1 domain-containing protein (.1) Lus10028723 [exp] 47 / 3e-05 AT1G20990 269 / 9e-89 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10014277 [exp] 41 / 0.0004 AT3G51030 185 / 4e-62 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10028349 [exp] 40 / 0.0006 AT3G51030 179 / 1e-59 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10014186 [exp] 40 / 0.0007 AT3G08710 192 / 3e-64 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2) Lus10025979 [exp] 40 / 0.0009 AT3G51030 167 / 3e-55 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF13905 [poplar] [flax] Thioredoxin_8 Thioredoxin-like
Representative CDS sequence Show only first row Show all	>Potri.010G059401.2 pacid=42799018 polypeptide=Potri.010G059401.2.p locus=Potri.010G059401 ID=Potri.010G059401.2.v4.1 annot-version=v4.1 ATGGCCACCGAAGACGTTTCTCTCGACCTTTCAAAGCTTCTTTCTTCAGAAGAGAGGGACTTTCTCATCCGCAACAATGGTGATCAGGTTAAGGTCAGCA ATTTGGTTGGGAAGATTGTGGGATTCTACTTCTCTGGTTCGTGGTGCGGGCCGTGCCGTAATTTCACTCCGTTGTTGGTAGAAGTCTATGAACAGCTATC ATCCAAAGGGGACTTTGAGGTGGTCTTCATTTCTTCTGACAGAGATGATGAATCCTTCAACACATACTTCTCCGAAATGCCATGGCTTGCTATTCCCTTC TCTGATACGGAGACCCGCAAACGTCTTAAGGAAGTGTTCAAAGTAAGAGGGATCCCTAATCTTGTCATTTTTGATACGAATGGCAAGGTTTCCTGCGATA ATGGAGTCAGCACTGTCAAGGAACATGGCGTGGATGGGTATCCGTTCAACCTTGATAGACTGAATTTCCTGAAAGAGCAAGAAGAGAATGCTAAGAAGAA TCAAACCATAAGCTCTATCTTGGTTTCAAGCTCACGTGATTATGTGATTTCAAATGATGGAAAAAAGATCCCTGTGTTGGACCTTGAAGGAAAATTGGTT GGCTTGTATTTCTCAATCCATGCTCATAGGATGTGCCGTGAATTCACTCCTAAACTAGTGGAATTGTACAAGAGGCTCAAGGAAAAAGGAGAGAACTTTG AAGTAGTCCTAATATCTCTAAACTCTGAGGAAAAACACTTCAAAGAGAGTTTTGAGACAATGCCTTGGTTGGCATTGCCGTTTAAGGACAAGAGCTGCGA GAAGCTAGCGCGGTATTTTGAACTTAGAACCATTCCTAATCTTGTCATAATTGGCCAAGATGGGAAGACTTTGAACCCAAATGTAGCTGAACTCATCGAA GACCATGGAATTGAAGCCTACCCATTTACACCGGAAAAGCTTGAGGAGCTAGCTGAAATTGAAAAGGCAAAACTGGAATCGCAGACGCTTGAGTCAGTTT TGGTTAATGGGGAAAATGATTTTGTGATTGACAAAAGTGGATCCAAGGTCCGAGTGTCTGATCTAGTTGGAAAGAACATTCTTCTTTACTTCTCAGCTCA ATGGTGCCCTCCTTGTCGTGCCTTTTTACCCAAGCTAATTGAAGCATACCACACAATTAAAGCAAAAGACAATGCATTTGAGGTGATCTTCATCTCAAGC GACAGAGATCAATCCACCTTTGACGAGTTCTATTCAGAAATGCCTTGGTTAGCCCTTCCATTTGGTGATGAAAGGAAACAAATCCTGAGTCGGAAATTCA AAATTCAAGGCATTCCTGCAGCTGTAGCGATTGGCCCAAGTGGCCGGACCATTACCAAGGAAGCTCGGATGCACTTGACAAGTTACGGGGCAGATGCTTT TCCATTTACCGAGGAACATCTAAAGCAATTGGAGGAGGAGCTTGAGGAAAAGGCAAAGGGGTGGCCAGAGAAAGTGAAACACGAACTTCATACTGAGCAT GAGCTGATACGTACTAAACGCAAAGTATATATTTGCAATGGCTGTCGTGGAACAGGACATAGTTGGTCTTTCTATTGCAAACAATGTGACTTTGATCTTC ACCCCAAGTGTGCTTTGAAGGAAGATGAAGATACTGGAAGTGAAAAGGGAAAGGAAGGAAGGATCTGCCATGGTGATGTGTGCCGCAGAGCTTAA
AA sequence Show only first row Show all	>Potri.010G059401.2 pacid=42799018 polypeptide=Potri.010G059401.2.p locus=Potri.010G059401 ID=Potri.010G059401.2.v4.1 annot-version=v4.1 MATEDVSLDLSKLLSSEERDFLIRNNGDQVKVSNLVGKIVGFYFSGSWCGPCRNFTPLLVEVYEQLSSKGDFEVVFISSDRDDESFNTYFSEMPWLAIPF SDTETRKRLKEVFKVRGIPNLVIFDTNGKVSCDNGVSTVKEHGVDGYPFNLDRLNFLKEQEENAKKNQTISSILVSSSRDYVISNDGKKIPVLDLEGKLV GLYFSIHAHRMCREFTPKLVELYKRLKEKGENFEVVLISLNSEEKHFKESFETMPWLALPFKDKSCEKLARYFELRTIPNLVIIGQDGKTLNPNVAELIE DHGIEAYPFTPEKLEELAEIEKAKLESQTLESVLVNGENDFVIDKSGSKVRVSDLVGKNILLYFSAQWCPPCRAFLPKLIEAYHTIKAKDNAFEVIFISS DRDQSTFDEFYSEMPWLALPFGDERKQILSRKFKIQGIPAAVAIGPSGRTITKEARMHLTSYGADAFPFTEEHLKQLEEELEEKAKGWPEKVKHELHTEH ELIRTKRKVYICNGCRGTGHSWSFYCKQCDFDLHPKCALKEDEDTGSEKGKEGRICHGDVCRRA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G60420			DC1 domain-containing protein ...		Potri.010G059401 [exp]	0	1
AT4G13440			Calcium-binding EF-hand family...		Potri.019G029000 [exp]	2.00	0.9142
AT1G60420			DC1 domain-containing protein ...		Potri.010G060100 [exp]	2.44	0.9172	Pt-PDI.6
AT4G13440			Calcium-binding EF-hand family...		Potri.019G027440 [exp]	3.16	0.9225
AT1G60420			DC1 domain-containing protein ...		Potri.010G059550 [exp]	4.58	0.9040
AT1G60420			DC1 domain-containing protein ...		Potri.010G059600 [exp]	5.19	0.9005
AT1G60420			DC1 domain-containing protein ...		Potri.010G059800 [exp]	6.32	0.8975
AT4G03500			Ankyrin repeat family protein ...		Potri.019G109150 [exp]	8.12	0.8957
AT4G03500			Ankyrin repeat family protein ...		Potri.019G107400 [exp]	9.48	0.9124
AT4G03500			Ankyrin repeat family protein ...		Potri.019G108501 [exp]	12.64	0.8747
					Potri.002G190900 [exp]	13.26	0.9006

Compare expression of checked genes

Potri.010G059401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.