Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60420 679 / 0 DC1 domain-containing protein (.1) AT4G31240 286 / 2e-91 protein kinase C-like zinc finger protein (.1.2) AT2G17740 47 / 2e-05 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G44400 44 / 5e-05 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G28270 45 / 6e-05 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G35010 44 / 9e-05 ATO1 thioredoxin O1 (.1.2) AT2G44370 44 / 0.0001 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G44380 44 / 0.0002 Cysteine/Histidine-rich C1 domain family protein (.1) AT5G40590 44 / 0.0002 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G44390 43 / 0.0002 Cysteine/Histidine-rich C1 domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G059700 [exp] 1069 / 0 AT1G60420 680 / 0.0 DC1 domain-containing protein (.1) Potri.010G059900 [exp] 1057 / 0 AT1G60420 652 / 0.0 DC1 domain-containing protein (.1) Potri.010G059600 [exp] 1042 / 0 AT1G60420 666 / 0.0 DC1 domain-containing protein (.1) Potri.010G059401 [exp] 1021 / 0 AT1G60420 667 / 0.0 DC1 domain-containing protein (.1) Potri.010G059550 [exp] 1016 / 0 AT1G60420 658 / 0.0 DC1 domain-containing protein (.1) Potri.010G060100 [exp] 1012 / 0 AT1G60420 654 / 0.0 DC1 domain-containing protein (.1) Potri.010G060300 [exp] 850 / 0 AT1G60420 560 / 0.0 DC1 domain-containing protein (.1) Potri.010G059800 [exp] 643 / 0 AT1G60420 390 / 1e-132 DC1 domain-containing protein (.1) Potri.008G175600 [exp] 515 / 0 AT1G60420 338 / 5e-112 DC1 domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013017 [exp] 679 / 0 AT1G60420 624 / 0.0 DC1 domain-containing protein (.1) Lus10017252 [exp] 300 / 5e-96 AT1G60420 311 / 1e-100 DC1 domain-containing protein (.1) Lus10005618 [exp] 277 / 2e-87 AT1G60420 300 / 2e-96 DC1 domain-containing protein (.1) Lus10029148 [exp] 134 / 4e-37 AT1G60420 121 / 5e-33 DC1 domain-containing protein (.1) Lus10028723 [exp] 48 / 2e-05 AT1G20990 269 / 9e-89 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10022305 [exp] 47 / 6e-05 AT3G01680 744 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10000548 [exp] 46 / 6e-05 AT3G01680 677 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10032103 [exp] 44 / 0.0004 AT3G01680 757 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10014277 [exp] 40 / 0.0007 AT3G51030 185 / 4e-62 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10014186 [exp] 40 / 0.001 AT3G08710 192 / 3e-64 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF13905 [poplar] [flax] Thioredoxin_8 Thioredoxin-like
Representative CDS sequence Show only first row Show all	>Potri.010G060200.1 pacid=42799327 polypeptide=Potri.010G060200.1.p locus=Potri.010G060200 ID=Potri.010G060200.1.v4.1 annot-version=v4.1 ATGGCCAACGAAGACGTTTCGCACGACCTTTCATCCCTTCTTTCGTCGGAAGAGAGGGACTTTCTCATCCGCAACAATGGTGACCAGGTGAAGGTCAGCA ATTTGGTTGGGAAGATTGTGGGATTCTATTTCTCTGGTTCGTGGTGCGGCCCATGCCGTAATTTCACTCCATTGTTGGTAGAAGTCTATGAACAACTATC ATCCAAAGGGGACTTTGAGGTGGTCTTCATTTCTTCTGACGGAGACGATGAATCCTTCAACACATACTTCTCCGAAATGCCTTGGCTTGCTATTCCCTTC TCTGATACGGAGACCCGCCAACGTCTTAAGGAAGTGTTCAAAGTAAGAGGGATCCCTAGGCTTGTCATTTTTGATACTAATGGTAAGGTTTCCTGCGATA ATGGAGTCAGACATGTCAAGGAACATGGCGTGGATGGGTATCCGTTCAACCTTGATAGACTGAATTTCCTTAAAGAGCAAGAAGAGAATGCTAAGAAGAA TCAAACCATAAGCTCTATCTTGGTTTCCAGCTCACGTGATTATGTGATTTCAAATGATGGAAAAAAGATCCCTGTGTTGGACCTTGAAGGAAAATTGGTT GGCTTGTATTTTTCAGCCCATGCTCATAGGATGTGCCGTGAATTCACTCCTAAACTAGTGGAACTGTATAAGACGCTCAAGGAAAAAAGAGAGAACTTCG AAGTAGTCCTAATATCTCTAGACGACGAAGAAGAAGACTTCAAAGAGAGTTTTGAGACAATGCCTTGGTTGGCATTGCCTTTTAAGGACAAGAGCTGCGA GAAGCTAGTGCGGTATTTTGAACTTAGAACCATTCCTAATCTTGTCATAATTGGCCAAGATGGGAAGACTTTGAACCCAAATGTAGCTGAACTAATCGAA GAACATGGTATTGAAGCCTACCCATTTACACCGGAAAAGCTTGACGAGCTAGCTGCAATTGAAAAGGCAAAACTGGAATCGCAGACGCTTGAGTCAGTTT TGGTTAATGGGGAAAATGATTTTGTGATTGACAAAAGTGGCTCCAAGGTCCCAGTGTCTGAACTAGTTGGAAAGAACATTCTTCTTTACTTCTCAGCTCA ATGGTGCCCTCCATGTCGTGCCTTTTTACCCAAGCTAATTGAAGCATACCACACAATTAAAAGAAAAGACAATGCATTTGAGGTGATCTTCATCTCAAGC GACAGAGATCAATCCACCTTTGACGAGTTCTATTCAGAAATGCCTTGGTTAGCCCTTCCATTTGGTGATGGAAGGAAACAAATCCTGAGTCGGAAATTCA AAATTCAAGGCATTCCTGCAGCTGTAGCGATTGGCCCAAGTGGCCGGACCATTACCAAGGAAGCTCGGATGCACTTGACAGCTTACGGGGCAGATGCTTT TCCATTTACCGAGGAACATCTAAAGCAATTGGAGGAGGAGCTTGAGGAAAAGGCAAAGGGGTGGCCAGAGAAAGTGAAACACGAACTTCATACTGAGCAT GAGCTGATACGTACTAAACGCAAAACATATATTTGCGATGGCTGTGGGGAAACTGGAAATAGGTGGTCTTTCTATTGCAAACAATGTGACTTTGATCTTC ACCCTAAGTGTGCTTTGAAGGAAGATGAAGATACTGGAATTGAAAAGGGAAAGGAAGGATGGAACTGCGATGGAGATGTGTGCCGCAGAGCTTAA
AA sequence Show only first row Show all	>Potri.010G060200.1 pacid=42799327 polypeptide=Potri.010G060200.1.p locus=Potri.010G060200 ID=Potri.010G060200.1.v4.1 annot-version=v4.1 MANEDVSHDLSSLLSSEERDFLIRNNGDQVKVSNLVGKIVGFYFSGSWCGPCRNFTPLLVEVYEQLSSKGDFEVVFISSDGDDESFNTYFSEMPWLAIPF SDTETRQRLKEVFKVRGIPRLVIFDTNGKVSCDNGVRHVKEHGVDGYPFNLDRLNFLKEQEENAKKNQTISSILVSSSRDYVISNDGKKIPVLDLEGKLV GLYFSAHAHRMCREFTPKLVELYKTLKEKRENFEVVLISLDDEEEDFKESFETMPWLALPFKDKSCEKLVRYFELRTIPNLVIIGQDGKTLNPNVAELIE EHGIEAYPFTPEKLDELAAIEKAKLESQTLESVLVNGENDFVIDKSGSKVPVSELVGKNILLYFSAQWCPPCRAFLPKLIEAYHTIKRKDNAFEVIFISS DRDQSTFDEFYSEMPWLALPFGDGRKQILSRKFKIQGIPAAVAIGPSGRTITKEARMHLTAYGADAFPFTEEHLKQLEEELEEKAKGWPEKVKHELHTEH ELIRTKRKTYICDGCGETGNRWSFYCKQCDFDLHPKCALKEDEDTGIEKGKEGWNCDGDVCRRA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G60420			DC1 domain-containing protein ...		Potri.010G060200 [exp]	0	1
AT1G60420			DC1 domain-containing protein ...		Potri.010G059900 [exp]	1.00	0.9563
AT1G60420			DC1 domain-containing protein ...		Potri.010G059700 [exp]	1.41	0.9334
AT1G60420			DC1 domain-containing protein ...		Potri.010G060300 [exp]	2.44	0.9089
AT5G40690			unknown protein		Potri.001G338100 [exp]	4.89	0.7737
AT1G60420			DC1 domain-containing protein ...		Potri.010G059600 [exp]	5.29	0.8534
AT1G60420			DC1 domain-containing protein ...		Potri.010G059800 [exp]	7.93	0.8162
AT1G60420			DC1 domain-containing protein ...		Potri.010G060100 [exp]	14.69	0.8298	Pt-PDI.6
AT4G05320		UBQ10	polyubiquitin 10 (.1.2.3.4.5.6...		Potri.004G094100 [exp]	18.97	0.7499
AT4G28440			Nucleic acid-binding, OB-fold-...		Potri.017G014400 [exp]	24.28	0.7503
					Potri.009G018200 [exp]	24.89	0.6276

Compare expression of checked genes

Potri.010G060200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.