Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67430 296 / 4e-104 Ribosomal protein L22p/L17e family protein (.1.2) AT1G27400 293 / 5e-103 Ribosomal protein L22p/L17e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G175500 [exp] 315 / 9e-112 AT1G67430 285 / 1e-99 Ribosomal protein L22p/L17e family protein (.1.2) Potri.015G094400 [exp] 311 / 4e-110 AT1G67430 324 / 4e-115 Ribosomal protein L22p/L17e family protein (.1.2) Potri.012G096600 [exp] 311 / 8e-110 AT1G27400 321 / 4e-114 Ribosomal protein L22p/L17e family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006421 [exp] 291 / 5e-102 AT1G67430 315 / 1e-111 Ribosomal protein L22p/L17e family protein (.1.2) Lus10015792 [exp] 262 / 5e-83 AT1G67420 511 / 2e-168 Zn-dependent exopeptidases superfamily protein (.1.2) Lus10037015 [exp] 261 / 1e-81 AT1G67420 1104 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00237 [poplar] [flax] Ribosomal_L22 Ribosomal protein L22p/L17e
Representative CDS sequence Show only first row Show all	>Potri.010G060400.1 pacid=42799023 polypeptide=Potri.010G060400.1.p locus=Potri.010G060400 ID=Potri.010G060400.1.v4.1 annot-version=v4.1 ATGGTGAAGTACTCTAGAGAGCCTGATAACCCCACCAAATCTTGCAAGGCAAGGGGCTCTGACCTCAGAGTTCACTTCAAGAATACAAGAGAGACAGCTT TTGCTCTAAGGAAGTTGCCTCTGGTCAAGGCCAAGAGGTATTTGGAAGATGTTATGGCTCACAAACAGGCCATTCCATTCCGACGTTTCTGTGGTGGAGT TGGGCGTACTGCACAAGCAAAGAACAGGCACTCTAATGGACAAGGACGATGGCCTGCCAAGTCTGCTAAGTTCATCTTGGATTTACTCAAGAATGCCGAG AGCAATGCTGAGGTCAAGGGTTTGGATGTGGATGCACTCTACATTACTCACATCCAGGTGAATCAGGCACAGAAGCAGAGACGTCGTACTTATCGGGCGC ATGGAAGAATTAATCCTTACATGTCCAGCCCTTGCCACATTGAGTTGACTTTATCTGAAAAGGAAGAGCCAGTTAAGAAAGAGCCTGAGACCCAGCTAGC AACCAGCAAGTCAAAGAAGTCTCAAGCCTCCTCTTGA
AA sequence Show only first row Show all	>Potri.010G060400.1 pacid=42799023 polypeptide=Potri.010G060400.1.p locus=Potri.010G060400 ID=Potri.010G060400.1.v4.1 annot-version=v4.1 MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFALRKLPLVKAKRYLEDVMAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPAKSAKFILDLLKNAE SNAEVKGLDVDALYITHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEPETQLATSKSKKSQASS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67430			Ribosomal protein L22p/L17e fa...		Potri.010G060400 [exp]	0	1
AT2G47110		UBQ6	ubiquitin 6 (.1.2)		Potri.002G190000 [exp]	1.41	0.9213
AT5G59850			Ribosomal protein S8 family pr...		Potri.010G208700 [exp]	2.00	0.9149	Pt-WRP15.1
AT5G43970		ATTOM22-V, TOM2...	TRANSLOCASE OUTER MITOCHONDRIA...		Potri.014G192601 [exp]	2.00	0.9080
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Potri.001G311000 [exp]	2.64	0.8893
AT4G33865			Ribosomal protein S14p/S29e fa...		Potri.001G295902 [exp]	4.24	0.8865
AT1G26880			Ribosomal protein L34e superfa...		Potri.012G108400 [exp]	6.00	0.8938	RPL34.4
AT5G50375		CPI1	cyclopropyl isomerase (.1.2)		Potri.015G093500 [exp]	9.38	0.8282
AT3G05590		RPL18	ribosomal protein L18 (.1)		Potri.002G202800 [exp]	9.79	0.8755	RPL18.9
AT5G61170			Ribosomal protein S19e family ...		Potri.004G118800 [exp]	11.09	0.9113	RPS19.1
AT5G20920		EIF2 BETA, EMB1...	embryo defective 1401, eukaryo...		Potri.019G131200 [exp]	12.24	0.8780	EIF2.2

Compare expression of checked genes

Potri.010G060400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.