Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67420 1085 / 0 Zn-dependent exopeptidases superfamily protein (.1.2) AT5G20660 176 / 2e-45 Zn-dependent exopeptidases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G175400 [exp] 1463 / 0 AT1G67420 1062 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2) Potri.008G039400 [exp] 176 / 3e-45 AT5G20660 1083 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2) Potri.006G153300 [exp] 45 / 0.0002 AT5G19740 877 / 0.0 Peptidase M28 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037015 [exp] 1181 / 0 AT1G67420 1104 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2) Lus10015792 [exp] 515 / 9e-170 AT1G67420 511 / 2e-168 Zn-dependent exopeptidases superfamily protein (.1.2) Lus10009230 [exp] 187 / 8e-49 AT5G20660 1154 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2) Lus10037997 [exp] 180 / 2e-46 AT5G20660 1157 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0035 [poplar] [flax] Peptidase_MH PF01546 [poplar] [flax] Peptidase_M20 Peptidase family M20/M25/M40
Representative CDS sequence Show only first row Show all	>Potri.010G060500.1 pacid=42798041 polypeptide=Potri.010G060500.1.p locus=Potri.010G060500 ID=Potri.010G060500.1.v4.1 annot-version=v4.1 ATGGCGTTGAGGCTGAGCTCAAGAGATGTAGCTGGATTCAAATTCCTCTTCTTTCTAGCGACCATCTTCAGTCTCATATCGGTTCTTGTTTACTCCACAA TTCACATGAAATTCATCAAGCCTCTCGAGATCGACGCCCCTCTCGATCGCTTCTCCGAGGCCAGAGCCATCCAACATGTTGCAGTTCTAACCAAAGACGG CCGTCAAGAAGGGCGTCCCGGATTAAGAAAAGCGGCGGTGTATATTAAAGAACAGTTAGAAATGCTAAAGGAGAGAGCTGAATCCAATATCAGAATTGAG GTTGAAGAGGCAACTGTTAATGGTACATTTAATATGATGGTTCTAGGGCACAGCATGTCTTTCTCTTATAGAAACCATATAAATATTGTTGCCAGGATAT CGTCAGCAGATTCGCAAGAAACTGACCCGTCTGTTTTAATTAATGGCCATTTTGATAGTCCTCTTGGTTCACCAGGAGCTGGTGATTGTGGTTCATGTGT TGCATCAATGCTGGAATTAGCTAGAGTTACTGCAGAATCGGGCTGGATTCCTCCTCGACCTATTATTTTTCTTTTTAACGGCGCAGAAGAACTTTTTATG TTGGGTGCACATGGCTTCATGAAGACACATAAATGGCGTGATTCAATTGGAGCTTCTATAAATGTGGAAGCATCTGGGACATCTGGTCCTGATTTAGTCT GCCAATCTGGACCTGGGTCTTGGCCTTCTCAATTATATGCAGAGTCTGCAGTATATCCCATGGCACATAGTGCTGTTCAGGACGTCTTTCATGCTATTCC TGGAGATACAGATTACAGAATATTTTCCCATGATCACGGAAACATTCCAAGCCTGGATATTATCTTTCTTCTTGGTGGTTATTACTACCATACATCCTAT GATACATTGGACAAATTACTACCTGGGATCATGCAAGCACGTGGAGACAATTTGTTCAGCATACTGAAAGCCTTCACAAATTCTTCTAAGCTACAAAGTG CTCGAGAGAGAGAATATCTTAAAGCTTCAATCAATGACTACAAGGATGAGAGGGCTGTTTTCTTTGATTTCTTATCATGGTTCATTATATTCTATTCAAG AAGGGTAGCTCTGGTACTTCATAGTATTCCCATTGTCATTTTTCTTGTCATGCCATTCCTTTTGCATTTTTGGGATTCTAGGTCACGTTCTTGTTTTGCA ACCTTCTATGATTTTTTGAAAGGAATGCTTTTCCATGCTGCTGGAATTATATTGGCTATTATTTTCCCAGTTATCTTTGCCACTGTGAGACTGTTCTTCA CTAGTTATGCGATGAGCTGGTTTGCACGTCCATACCTGGCATTCCTGATGTTTGTCCCAAGCTCACTTGTTGGTTTGCTGATTCCAAGAACTGTTTGGGG TTGTTCCCCCCCCTCACAAGATGTTTCAGTCATCAATAAATCAGAGGCTCTATCTGAAGAAGCAAGGTTTTGGGGAGCATTTGGATTTTATGCTTGCATA ACTTCGGCCTATCTGGTAGCTGGGCTCGGTGGAGGGTTTCTGACCTTTATTGTGTTGGCATCTATGCTTCCTGCATGGATCTTCTTTTCCCTATCTGTCA AGTCCTATGATCATCATCAATCACCCAGGCCAGCAGTTTTTTATGTAATACCTCTAATTCCATGTCTCACTTACTTAGCATATTTTAGTGGATCTGTAAT CCAATTTTTGATCGAGAAGATGGGTATGATAGGTTTTCTCCCACCTCCCTATGGGTATTATGTTGCTGATGTTTTCGTGGCAGCAACAATTGGCGTTGCA ACTGGTTTGTGTGTGGGCCCAATAATACCTGTGTGTAGTCACTGGTTAGCTCGGTCTTCAATCTTGCAGCTCTTGTTGCATGTTAGTGTGCTTGCTCTGG CTTTGTCATCTCAATTCTTTCCATACAGCAATCTTGCACCAAAGAGGGTTGTTTTTCAGCATACGCTTGTTACTACAGATGCGAATAGGATTGTGAACTC CAGCTATGGATTTTCTGTTTTAGATTCCAATTCTTTATCATTTCTTTTCAAATATGCTCCTGAAGTGGCAAAGGGACTGCATATGGGCCAAGAGTTATCT TTTGAAACTGCTAGTATGTCTCCCCGAGAGACCTGGTTGGGAATTTTTCCAGTGTCTCTTTTGTTTTCGCAAAGCTTAAAGTTCCCTGCAAGGAGTGATG GCGTTTTTAAACAATATAGATATTTCCCCTACTTATCTACTTACAAGCCACATACCATCTCCAGTGATAGATCTCGGAGAGTTTACTTGGAATTTTCCTT GGGTGATTTGGAGGAGGTTTGGGTTGCAGTCCTTAACATCACCGGTCCTTTATCAAGCTGGTCATTTGCAGACAACATGCTTCCAGATCCTGAAACAGTG GAAGGTGGTCCGCCATCCTACATATTGAGACTTAGTGGAACCAGCCAAGCAAACTGGACGTTCTGGTTAGAGGCCAGCAGTTCTGATGATTTGAGGGTGG AAGTTGCTGTGGTAGACCAAGTTTTAGATGATGAAGCACAGAGGTTGAAAGGCCTTTTCCCAGACTGGGCAGGTGTCACTGCTTATTCTAGCTTTATGTC CAGCTACATTTTCTAA
AA sequence Show only first row Show all	>Potri.010G060500.1 pacid=42798041 polypeptide=Potri.010G060500.1.p locus=Potri.010G060500 ID=Potri.010G060500.1.v4.1 annot-version=v4.1 MALRLSSRDVAGFKFLFFLATIFSLISVLVYSTIHMKFIKPLEIDAPLDRFSEARAIQHVAVLTKDGRQEGRPGLRKAAVYIKEQLEMLKERAESNIRIE VEEATVNGTFNMMVLGHSMSFSYRNHINIVARISSADSQETDPSVLINGHFDSPLGSPGAGDCGSCVASMLELARVTAESGWIPPRPIIFLFNGAEELFM LGAHGFMKTHKWRDSIGASINVEASGTSGPDLVCQSGPGSWPSQLYAESAVYPMAHSAVQDVFHAIPGDTDYRIFSHDHGNIPSLDIIFLLGGYYYHTSY DTLDKLLPGIMQARGDNLFSILKAFTNSSKLQSAREREYLKASINDYKDERAVFFDFLSWFIIFYSRRVALVLHSIPIVIFLVMPFLLHFWDSRSRSCFA TFYDFLKGMLFHAAGIILAIIFPVIFATVRLFFTSYAMSWFARPYLAFLMFVPSSLVGLLIPRTVWGCSPPSQDVSVINKSEALSEEARFWGAFGFYACI TSAYLVAGLGGGFLTFIVLASMLPAWIFFSLSVKSYDHHQSPRPAVFYVIPLIPCLTYLAYFSGSVIQFLIEKMGMIGFLPPPYGYYVADVFVAATIGVA TGLCVGPIIPVCSHWLARSSILQLLLHVSVLALALSSQFFPYSNLAPKRVVFQHTLVTTDANRIVNSSYGFSVLDSNSLSFLFKYAPEVAKGLHMGQELS FETASMSPRETWLGIFPVSLLFSQSLKFPARSDGVFKQYRYFPYLSTYKPHTISSDRSRRVYLEFSLGDLEEVWVAVLNITGPLSSWSFADNMLPDPETV EGGPPSYILRLSGTSQANWTFWLEASSSDDLRVEVAVVDQVLDDEAQRLKGLFPDWAGVTAYSSFMSSYIF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67420			Zn-dependent exopeptidases sup...		Potri.010G060500 [exp]	0	1
AT4G14290			alpha/beta-Hydrolases superfam...		Potri.008G200400 [exp]	1.00	0.7271
AT2G33620	AT-hook		AT hook motif DNA-binding fami...		Potri.002G005000 [exp]	3.00	0.6591
AT5G53460		GLT1	NADH-dependent glutamate synth...		Potri.012G011700 [exp]	5.91	0.6320	Pt-GLT1.3
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Potri.004G070500 [exp]	11.66	0.6983
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Potri.002G072100 [exp]	12.40	0.5913
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Potri.017G136000 [exp]	18.73	0.5823
AT4G27190			NB-ARC domain-containing disea...		Potri.001G446650 [exp]	18.84	0.6433
AT4G33440			Pectin lyase-like superfamily ...		Potri.007G105800 [exp]	22.75	0.6090
AT1G17500			ATPase E1-E2 type family prote...		Potri.001G197500 [exp]	22.80	0.6209
AT2G45540			WD-40 repeat family protein / ...		Potri.014G072600 [exp]	26.68	0.6515

Compare expression of checked genes

Potri.010G060500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.