Plant FIBer expression Database

Potri.010G060700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G67400 419 / 1e-149 ELMO/CED-12 family protein (.1)
AT2G44770 328 / 7e-114 ELMO/CED-12 family protein (.1)
AT3G60260 320 / 9e-111 ELMO/CED-12 family protein (.1.2.3.4)
AT3G03610 279 / 1e-93 ELMO/CED-12 family protein (.1)
AT1G03620 273 / 3e-92 ELMO/CED-12 family protein (.1)
AT3G43400 234 / 8e-78 ELMO/CED-12 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G175301
[exp]
514 / 0 AT1G67400 422 / 6e-151 ELMO/CED-12 family protein (.1)
Potri.014G049800
[exp]
328 / 1e-113 AT3G60260 434 / 1e-155 ELMO/CED-12 family protein (.1.2.3.4)
Potri.002G138700
[exp]
323 / 8e-112 AT3G60260 459 / 8e-166 ELMO/CED-12 family protein (.1.2.3.4)
Potri.013G069000
[exp]
249 / 4e-82 AT3G03610 441 / 6e-157 ELMO/CED-12 family protein (.1)
Potri.013G136200
[exp]
245 / 4e-80 AT1G03620 322 / 1e-110 ELMO/CED-12 family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037017
[exp]
417 / 1e-148 AT1G67400 386 / 2e-136 ELMO/CED-12 family protein (.1)
Lus10015790
[exp]
411 / 1e-146 AT1G67400 385 / 4e-136 ELMO/CED-12 family protein (.1)
Lus10024285
[exp]
338 / 8e-118 AT2G44770 454 / 1e-163 ELMO/CED-12 family protein (.1)
Lus10003841
[exp]
291 / 4e-97 AT2G44770 407 / 2e-142 ELMO/CED-12 family protein (.1)
Lus10039805
[exp]
259 / 5e-87 AT1G03620 327 / 3e-114 ELMO/CED-12 family protein (.1)
Lus10018574
[exp]
256 / 2e-85 AT1G03620 328 / 7e-114 ELMO/CED-12 family protein (.1)
Lus10009523
[exp]
256 / 7e-85 AT3G03610 429 / 4e-152 ELMO/CED-12 family protein (.1)
Lus10020344
[exp]
253 / 2e-83 AT3G03610 428 / 1e-151 ELMO/CED-12 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04727 ELMO_CED12 ELMO/CED-12 family
Representative CDS sequence
>Potri.010G060700.2 pacid=42798813 polypeptide=Potri.010G060700.2.p locus=Potri.010G060700 ID=Potri.010G060700.2.v4.1 annot-version=v4.1
ATGAGTATTGTCAGGGCCCGGGGTAGCTGCGTGGCCATCCGTACTCTCTCTCCTTCTACAACCACCAACCGATCTTGCGCTCACGGCTCTGCTTCTTCAG
ATGATGCAACTTGCGGGTCGCCAACTTGGATTGGTAAGGGCCTCACTTGTGTTTGCTTCAAGCGAAAGGGAGCATATGAACGAATTTGCATTAACTTGAC
CCCTCAACAGGAAGAAAGATTGAAGAGGTTGAAGGATAGGATGAAGGTTTATTTTGATGCTTCCAGGCCAGAACACCAGGATGCTTTGAGAGCTCTATGG
TCTGCCACGTATCCTGATCGGGAGCTGAGTGGTTTAATATCTGATCAATGGAAAGAAATGGGATGGCAGGGAAGAGATCCATCTACTGATTTCAGAGGAG
CTGGATTCCTTTCTCTGGAAAACCTAGTGTTCTTTGCGAAGACATTTTCAATATCATTTCAACATTTGCTAAGAAAACAAGGAGGAAAACGATCTGCTTG
GGAGTATCCATTTGCTGTTGCTGGTGTAAATATCACATTTATGATTATGCAGATGCTTGACCTTGATGCCATGAAACCTCGAACATTTGTCAGACCAGTT
TTCTTACAGATTCTGTCAGAAAGCGAATGGGCATTTGACCTTCTCTATTGTGTGGCTTTCGTGGTCATGGACAATCAATGGCTACATAGAAATGCTACAT
ACATGGAGTTCAATGATGTCTTGAAATCTACTCGAGCTCAGGTAGAGAGAGAACTTCTAATGGATGACGTCTTACGGATTGAAGACATGCCTTCTTACAG
CCTTCTCATTTAG
AA sequence
>Potri.010G060700.2 pacid=42798813 polypeptide=Potri.010G060700.2.p locus=Potri.010G060700 ID=Potri.010G060700.2.v4.1 annot-version=v4.1
MSIVRARGSCVAIRTLSPSTTTNRSCAHGSASSDDATCGSPTWIGKGLTCVCFKRKGAYERICINLTPQQEERLKRLKDRMKVYFDASRPEHQDALRALW
SATYPDRELSGLISDQWKEMGWQGRDPSTDFRGAGFLSLENLVFFAKTFSISFQHLLRKQGGKRSAWEYPFAVAGVNITFMIMQMLDLDAMKPRTFVRPV
FLQILSESEWAFDLLYCVAFVVMDNQWLHRNATYMEFNDVLKSTRAQVERELLMDDVLRIEDMPSYSLLI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G67400 ELMO/CED-12 family protein (.1... Potri.010G060700
[exp]
0 1
AT4G13730 Ypt/Rab-GAP domain of gyp1p su... Potri.006G069300
[exp]
2.00 0.8562
AT3G17650 YSL5, PDE321 pigment defective 321, YELLOW ... Potri.004G069300
[exp]
3.00 0.8673
AT2G30140 UDP-Glycosyltransferase superf... Potri.009G077200
[exp]
5.19 0.8345
AT1G17260 AHA10 autoinhibited H\(+\)-ATPase is... Potri.001G161400
[exp]
8.24 0.8310 AHA10.1
AT5G41315 bHLH MYC6.2, GL3 GLABROUS 3, GLABRA 3, basic he... Potri.002G159400
[exp]
9.21 0.8289 Pt-TAN1.2
AT5G49690 UDP-Glycosyltransferase superf... Potri.010G182575
[exp]
12.00 0.7740
AT5G21482 ATCKX5, CKX7 ARABIDOPSIS THALIANA CYTOKININ... Potri.006G221000
[exp]
12.96 0.7892
AT3G19850 Phototropic-responsive NPH3 fa... Potri.008G085500
[exp]
14.45 0.8143
AT1G16060 AP2_ERF ADAP ARIA-interacting double AP2 do... Potri.001G041500
[exp]
15.65 0.8220
AT5G41040 HXXXD-type acyl-transferase fa... Potri.015G100800
[exp]
18.00 0.8121

Potri.010G060700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.