Plant FIBer expression Database

Potri.010G060800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G175200
[exp]
404 / 2e-144 ND /
Potri.010G061000
[exp]
107 / 9e-30 ND /
Potri.002G122300
[exp]
40 / 0.0007 AT4G24210 185 / 2e-60 SLEEPY1, F-box family protein (.1)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0271 F-box PF12937 F-box-like F-box-like
Representative CDS sequence
>Potri.010G060800.1 pacid=42797792 polypeptide=Potri.010G060800.1.p locus=Potri.010G060800 ID=Potri.010G060800.1.v4.1 annot-version=v4.1
ATGGAAGAGGGTTTAGCTTTAGTAGTGGAGAGGAAAGGAAAGAAAAGGAAAAGAAAGAAGATGAGGGAGGATCGAGGTCGTCCCTTTTGTCAAGACCCTT
TGGATGTGCTTGGTAGGGACTTGATGTTGAGGGTTTTGAACAACCTTGACGCACGCAGCTTGGCACTATGTCTCGTCGTTTCTCGTACCTGGAACCGTGT
TGCTTCTAGTGATCTTCTCTGGACCTCCAAGTGTGAGGAATTGTGGTGTGGGAAGGCACACATACCGCGCTTGTCTCTTGTCCGGGGAATTTCTAAGTTG
GATGCTTATTCACTATCTGTTATGGATGGCAAACGCAATCGTATCATGAGGGATGATCTATGTGATCACGTTTGGGAGTTTCACTTTACCAAGGCAGCTC
CAGAATACTGGCGCAATCTTGATCCCTACTGGAAAGGCAATGGCCCTCCCATGCACCGGTACTTTCATCCAGATGGAAGCCAAACTGCAGATCCTGGTGA
CAAGGTCTGGGGTGGTCATGAAAGCTGCTATTCCATCGTGACTAGTATTATTGGCGAAGGAAAGATCAGGGAGCACTATGTTCGGATAAACCGGTGGCGT
CCTCTTGCTGTGTCCAGGAAACAGGACTGGAGCTGGGAAATGACCAACAACCTTTTCTGTTACTCAAGTATTCCAGATGCCTACAAGGAAGGTGGAACGG
GACCACTCTTTTTGGTTATGTAA
AA sequence
>Potri.010G060800.1 pacid=42797792 polypeptide=Potri.010G060800.1.p locus=Potri.010G060800 ID=Potri.010G060800.1.v4.1 annot-version=v4.1
MEEGLALVVERKGKKRKRKKMREDRGRPFCQDPLDVLGRDLMLRVLNNLDARSLALCLVVSRTWNRVASSDLLWTSKCEELWCGKAHIPRLSLVRGISKL
DAYSLSVMDGKRNRIMRDDLCDHVWEFHFTKAAPEYWRNLDPYWKGNGPPMHRYFHPDGSQTADPGDKVWGGHESCYSIVTSIIGEGKIREHYVRINRWR
PLAVSRKQDWSWEMTNNLFCYSSIPDAYKEGGTGPLFLVM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.010G060800
[exp]
0 1
AT1G18470 Transmembrane Fragile-X-F-asso... Potri.015G050300
[exp]
1.41 0.7666
AT2G01490 phytanoyl-CoA dioxygenase (Phy... Potri.006G222800
[exp]
3.00 0.7012
AT5G58380 PKS2, CIPK10, S... SNF1-RELATED PROTEIN KINASE 3.... Potri.019G127500
[exp]
5.29 0.6724 Pt-CIPK2.1
AT3G13340 Transducin/WD40 repeat-like su... Potri.011G168600
[exp]
7.48 0.7017
Potri.008G175200
[exp]
8.48 0.6982
AT5G21090 Leucine-rich repeat (LRR) fami... Potri.001G219500
[exp]
10.95 0.6910
AT5G13190 AtGILP GSH-induced LITAF domain prote... Potri.003G165900
[exp]
12.00 0.6588
AT5G27320 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/... Potri.013G028700
[exp]
23.02 0.6485
AT4G33940 RING/U-box superfamily protein... Potri.004G143900
[exp]
23.23 0.5950
AT2G24100 ASG1 ALTERED SEED GERMINATION 1, un... Potri.003G185050
[exp]
26.83 0.6426

Potri.010G060800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.