Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09270 202 / 8e-66 ATGSTU8 glutathione S-transferase TAU 8 (.1) AT2G29420 201 / 4e-65 GST25, ATGSTU7 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) AT2G29450 183 / 3e-58 ATGSTU1, AT103-1A, ATGSTU5 ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 1, glutathione S-transferase tau 5 (.1) AT2G29460 178 / 4e-56 GST22, ATGSTU4 GLUTATHIONE S-TRANSFERASE 22, glutathione S-transferase tau 4 (.1) AT2G29490 176 / 3e-55 GST19, ATGSTU1 GLUTATHIONE S-TRANSFERASE 19, glutathione S-transferase TAU 1 (.1) AT2G29480 172 / 6e-54 GST20, ATGSTU2 GLUTATHIONE S-TRANSFERASE 20, glutathione S-transferase tau 2 (.1) AT2G29470 171 / 1e-53 GST21, ATGSTU3 GLUTATHIONE S-TRANSFERASE 21, glutathione S-transferase tau 3 (.1) AT1G78320 171 / 2e-53 ATGSTU23 glutathione S-transferase TAU 23 (.1) AT2G29440 169 / 1e-52 GST24, ATGSTU6 GLUTATHIONE S-TRANSFERASE 24, glutathione S-transferase tau 6 (.1) AT1G78370 166 / 2e-51 ATGSTU20 glutathione S-transferase TAU 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G061401 [exp] 307 / 4e-108 AT3G09270 113 / 7e-32 glutathione S-transferase TAU 8 (.1) Potri.002G254000 [exp] 296 / 1e-102 AT2G29420 167 / 1e-51 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061700 [exp] 288 / 1e-99 AT2G29420 172 / 1e-53 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G060900 [exp] 282 / 3e-97 AT2G29420 175 / 7e-55 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.008G175100 [exp] 278 / 8e-96 AT2G29420 169 / 1e-52 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061100 [exp] 276 / 8e-95 AT2G29490 172 / 5e-54 GLUTATHIONE S-TRANSFERASE 19, glutathione S-transferase TAU 1 (.1) Potri.010G061301 [exp] 271 / 8e-93 AT2G29420 202 / 9e-66 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061800 [exp] 270 / 2e-92 AT2G29420 187 / 1e-59 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.008G175000 [exp] 269 / 4e-92 AT2G29420 177 / 7e-56 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035241 [exp] 275 / 3e-94 AT2G29420 188 / 5e-60 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10021102 [exp] 209 / 2e-68 AT3G09270 245 / 2e-82 glutathione S-transferase TAU 8 (.1) Lus10001491 [exp] 209 / 2e-68 AT3G09270 185 / 5e-59 glutathione S-transferase TAU 8 (.1) Lus10021103 [exp] 206 / 3e-67 AT3G09270 250 / 1e-84 glutathione S-transferase TAU 8 (.1) Lus10007897 [exp] 201 / 7e-65 AT2G29420 187 / 1e-59 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10041654 [exp] 195 / 1e-62 AT2G29420 175 / 1e-54 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10017208 [exp] 190 / 7e-61 AT3G09270 212 / 3e-69 glutathione S-transferase TAU 8 (.1) Lus10016471 [exp] 181 / 3e-57 AT2G29420 234 / 8e-78 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10040761 [exp] 179 / 2e-56 AT2G29420 233 / 1e-77 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10016469 [exp] 177 / 1e-55 AT2G29420 230 / 2e-76 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0497 [poplar] [flax] GST_C PF00043 [poplar] [flax] GST_C Glutathione S-transferase, C-terminal domain CL0172 [poplar] [flax] Thioredoxin PF13417 [poplar] [flax] GST_N_3 Glutathione S-transferase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.010G061200.1 pacid=42800116 polypeptide=Potri.010G061200.1.p locus=Potri.010G061200 ID=Potri.010G061200.1.v4.1 annot-version=v4.1 ATGGCTGAAGTTAAGCTGCTAGGAACATGGCCTAGTCCTTTCAGTTATAGAGTCATATGGGCTCTAAAACTTAAGGGCATACCATACGAGTACATTGAAG AAGATCTTTCCAACAAAAGCCCCTTGCTTCTTCAATGCAACCCAGTCCACAAAAAGATTCCAGTTCTCATCCATGGGGGAAAATCAATTTGCGAATCCTT GGTCATTCTAGAATACATGGAAGAGACCTGGCCCCAAATTCCACTGATGCCCGATGATCCTTACGAGAGAGCTAGAGCAAGGTTCTGGGTTAAATTTGTT GAAGATAAGGGTGTTGCGGTATGGATTATGTTCTATAGCAGCGGAGAAGAGCAAGAAAAGGCAGTGAAGGACAGCTTGGAAATGCTAAAAACCATTGAAG AACATGCTCTGGGAAAGAAGAGATTTTTCTGCGGAGACAAGATTAGCTTGGTGGACATAGCCTATGGCTGGATTGCCCAGTGGTTGGAAGTCTTGGAAGA AGTGGCAGGAATAAAACTGATTGAACCCCAGAAATTTCCTCGCCTGCATACATGGATAAAAAATTTCAAGGACGAGCCCATAATCAAGGAAAATCTGCCA GGACATGACGAGATGCTGGTCTACTTTAAACCTCTCGGAGGAAGGGCACCATCACGCTAA
AA sequence Show only first row Show all	>Potri.010G061200.1 pacid=42800116 polypeptide=Potri.010G061200.1.p locus=Potri.010G061200 ID=Potri.010G061200.1.v4.1 annot-version=v4.1 MAEVKLLGTWPSPFSYRVIWALKLKGIPYEYIEEDLSNKSPLLLQCNPVHKKIPVLIHGGKSICESLVILEYMEETWPQIPLMPDDPYERARARFWVKFV EDKGVAVWIMFYSSGEEQEKAVKDSLEMLKTIEEHALGKKRFFCGDKISLVDIAYGWIAQWLEVLEEVAGIKLIEPQKFPRLHTWIKNFKDEPIIKENLP GHDEMLVYFKPLGGRAPSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Potri.010G061200 [exp]	0	1
AT5G06800	GARP		myb-like HTH transcriptional r...		Potri.001G228500 [exp]	4.89	0.9502
					Potri.018G112701 [exp]	5.00	0.9030
AT2G03830		RGF8	root meristem growth factor 8,...		Potri.010G138001 [exp]	9.94	0.9386
AT4G20820			FAD-binding Berberine family p...		Potri.001G464800 [exp]	10.19	0.9311
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.017G134151 [exp]	10.24	0.9248
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Potri.001G101000 [exp]	14.42	0.9012
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Potri.007G114525 [exp]	16.73	0.9225
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.001G302400 [exp]	17.83	0.9246
AT2G38740			Haloacid dehalogenase-like hyd...		Potri.002G135000 [exp]	18.57	0.8457
AT2G39705		RTFL8, DVL11	DEVIL 11, ROTUNDIFOLIA like 8 ...		Potri.008G057800 [exp]	18.81	0.8212

Compare expression of checked genes

Potri.010G061200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.