Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29420 172 / 7e-54 GST25, ATGSTU7 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) AT3G09270 166 / 1e-51 ATGSTU8 glutathione S-transferase TAU 8 (.1) AT2G29480 156 / 1e-47 GST20, ATGSTU2 GLUTATHIONE S-TRANSFERASE 20, glutathione S-transferase tau 2 (.1) AT2G29460 156 / 1e-47 GST22, ATGSTU4 GLUTATHIONE S-TRANSFERASE 22, glutathione S-transferase tau 4 (.1) AT1G78340 155 / 2e-47 ATGSTU22 glutathione S-transferase TAU 22 (.1) AT1G78320 154 / 6e-47 ATGSTU23 glutathione S-transferase TAU 23 (.1) AT2G29490 154 / 6e-47 GST19, ATGSTU1 GLUTATHIONE S-TRANSFERASE 19, glutathione S-transferase TAU 1 (.1) AT5G62480 154 / 1e-46 GST14B, ATGSTU9 GLUTATHIONE S-TRANSFERASE 14B, GLUTATHIONE S-TRANSFERASE 14, glutathione S-transferase tau 9 (.1.2) AT2G29440 153 / 2e-46 GST24, ATGSTU6 GLUTATHIONE S-TRANSFERASE 24, glutathione S-transferase tau 6 (.1) AT1G74590 153 / 3e-46 ATGSTU10 glutathione S-transferase TAU 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G254000 [exp] 266 / 2e-90 AT2G29420 167 / 1e-51 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.008G174900 [exp] 264 / 5e-90 AT2G29420 184 / 1e-58 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061800 [exp] 260 / 2e-88 AT2G29420 187 / 1e-59 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061301 [exp] 258 / 6e-88 AT2G29420 202 / 9e-66 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.008G175000 [exp] 258 / 1e-87 AT2G29420 177 / 7e-56 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.016G118500 [exp] 251 / 4e-85 AT2G29420 194 / 3e-62 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061200 [exp] 243 / 1e-81 AT3G09270 202 / 8e-66 glutathione S-transferase TAU 8 (.1) Potri.010G061700 [exp] 228 / 7e-76 AT2G29420 172 / 1e-53 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061100 [exp] 223 / 1e-73 AT2G29490 172 / 5e-54 GLUTATHIONE S-TRANSFERASE 19, glutathione S-transferase TAU 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035241 [exp] 211 / 6e-69 AT2G29420 188 / 5e-60 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10001491 [exp] 185 / 7e-59 AT3G09270 185 / 5e-59 glutathione S-transferase TAU 8 (.1) Lus10007897 [exp] 180 / 6e-57 AT2G29420 187 / 1e-59 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10041654 [exp] 177 / 2e-55 AT2G29420 175 / 1e-54 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10021102 [exp] 176 / 4e-55 AT3G09270 245 / 2e-82 glutathione S-transferase TAU 8 (.1) Lus10021103 [exp] 176 / 4e-55 AT3G09270 250 / 1e-84 glutathione S-transferase TAU 8 (.1) Lus10040727 [exp] 168 / 6e-52 AT2G29420 216 / 6e-71 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10007896 [exp] 158 / 3e-48 AT2G29490 171 / 2e-53 GLUTATHIONE S-TRANSFERASE 19, glutathione S-transferase TAU 1 (.1) Lus10016471 [exp] 157 / 5e-48 AT2G29420 234 / 8e-78 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10016469 [exp] 155 / 3e-47 AT2G29420 230 / 2e-76 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0497 [poplar] [flax] GST_C PF13410 [poplar] [flax] GST_C_2 Glutathione S-transferase, C-terminal domain CL0172 [poplar] [flax] Thioredoxin PF13417 [poplar] [flax] GST_N_3 Glutathione S-transferase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.010G061600.2 pacid=42799716 polypeptide=Potri.010G061600.2.p locus=Potri.010G061600 ID=Potri.010G061600.2.v4.1 annot-version=v4.1 ATGGAAGATGTGAAGCTGCATAGTTTCTGGCCTAGCCCGTACTGTTACAGAGTGATATGGGCACTGAAACTAAAGGGTATCAGATATGAGTACGTAGAAG AAGACCTTTCCAACAAAAGTCAAGCACTATTGCAGTACAACCCGATTCATAAGAAGGTTCCGGTACTTGTTCATGGCGGCAAACCAATTGTGGAGTCCAT GGTTATTCTTGAATACATAGAAGAAACGTGGCCGGATCATCCTTTGCTACCAAAAGATGCTTACGAGAGAGCCACAGCTCGATTCTGGATTCAATTTGGA ATAGACAAGGGCATGGCATTTTTTGCATTTTTCCGAGCGACTGAAGAAGAGAAAGAGAAGGCAGCAAAAGAAGCATTAGAAGTGCTAAAAATCCTGGAAG AGCAATGCCTTGGAGACAAGAAGTTTTTCGGAGGGGAAAACATTGGGATGGTAGATATAGCATATGGGTGGCTGGCTCACTGGTTTGAAGCCTCGGAAGA AATGGTTGGTGTGAAATTGGTGGAACCAAGCACTTTGCCTCGCTTACATGCCTGGATTCAGCGTCTTAAAGAAATTCCAGTGATAAAAGAGAACCTTCCT GATCGTGAGAGACTGCTGGTGCATTTTAGACGCTTAAGGCAGATGTTTCTCTCGGACCCGTCTATGTAG
AA sequence Show only first row Show all	>Potri.010G061600.2 pacid=42799716 polypeptide=Potri.010G061600.2.p locus=Potri.010G061600 ID=Potri.010G061600.2.v4.1 annot-version=v4.1 MEDVKLHSFWPSPYCYRVIWALKLKGIRYEYVEEDLSNKSQALLQYNPIHKKVPVLVHGGKPIVESMVILEYIEETWPDHPLLPKDAYERATARFWIQFG IDKGMAFFAFFRATEEEKEKAAKEALEVLKILEEQCLGDKKFFGGENIGMVDIAYGWLAHWFEASEEMVGVKLVEPSTLPRLHAWIQRLKEIPVIKENLP DRERLLVHFRRLRQMFLSDPSM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Potri.010G061600 [exp]	0	1
AT1G44970			Peroxidase superfamily protein...		Potri.002G031200 [exp]	3.00	0.8053
AT3G16340		ABCG29, ATPDR1,...	ATP-binding cassette G29, plei...		Potri.003G049600 [exp]	10.00	0.7408
AT5G25050			Major facilitator superfamily ...		Potri.006G266000 [exp]	14.14	0.7714
AT5G16970		AT-AER	alkenal reductase (.1)		Potri.017G002950 [exp]	17.49	0.7463
AT3G58060			Cation efflux family protein (...		Potri.001G010300 [exp]	32.18	0.7674
					Potri.012G138200 [exp]	32.83	0.7881
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.010G054100 [exp]	36.85	0.7079
AT5G61010		ATEXO70E2	exocyst subunit exo70 family p...		Potri.015G058200 [exp]	37.10	0.7156
AT3G12740		ALIS1	ALA-interacting subunit 1 (.1)		Potri.010G173900 [exp]	41.12	0.7313
AT3G02430			Protein of unknown function (D...		Potri.003G008600 [exp]	57.28	0.7080

Compare expression of checked genes

Potri.010G061600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.