Plant FIBer expression Database

Potri.010G062000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G23980 389 / 1e-124 KOS1, BLI KOLD SENSITIV 1, BLISTER (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G174800
[exp]
898 / 0 AT3G23980 407 / 8e-132 KOLD SENSITIV 1, BLISTER (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023694
[exp]
496 / 1e-164 AT3G23980 447 / 1e-146 KOLD SENSITIV 1, BLISTER (.1)
Lus10035243
[exp]
483 / 2e-159 AT3G23980 428 / 6e-139 KOLD SENSITIV 1, BLISTER (.1)
PFAM info
Representative CDS sequence
>Potri.010G062000.1 pacid=42798543 polypeptide=Potri.010G062000.1.p locus=Potri.010G062000 ID=Potri.010G062000.1.v4.1 annot-version=v4.1
ATGGCGTCGGCTCAGGCGTTGCCAGGCTCACGGAAACAGGAGCATCTCGAAGCAGGAAAGCGACGGTTGGAGGAGTTCCGCAAGAAAAAGGCAGCAGAGC
GAGCCAAGAAAGCCGCACCCACCAGCCAACCTCATGCTTTGGATGTGAGCCTAGATCAGAAGCAACTGTTGGAGACTGAGCATGCACGACTAACAGATTC
AGATGGAGTTGGCACATCTGATGGACCTGGCAGACCTGTTGAACCCATTGGTGCATCTATGAACAATGGCAACAAAATTTATATTACCGAGAAAGTTGAA
CTAAGTTCTTTGAAAGATTCAGAACCTAGTCGTCCTTCATTGAGTGATTATAGTACATCGTTTTCAGGAATAACACAGAAACACACAAATCATTTTGATT
CAAACAGGCATGATGCTTCAGGACTCGCTGGATCAGCCAATGTTAAGTATGGCCAAGAGACAGAAAAAATGAATAATGAATCTGGAATATATACAGGGAG
CCAAGGGGACAGGAGTTCATCTGACCATTCTATTGTTAGTGGTTTTTATGGCAGTTCTAGTCAATCCAGCCTTTATGGAAGGGAGTTGCTCCAATCCAAA
GAAAATAACATATCTTTAAAGCATTCTGTGGTTGATAATGATAGCACTCATTTCCTTACTTCATATCAAAGTTCTGCCAGCTCTGAACAGCAAACCTTTA
AGCCCAGTTATAGTAGCTTCCCTGCCACTGTTGTGGACTCTACCCTGCCAAATATGAAGCTGAGAGATTCTGATTCTGAAGTTGAGCAGGACATGCGTTT
CAATTATCCCATGAATTTGGATTTTGGTGAAAGAAATTTTAGTAGCTCCACCAGTAATTTGCGTACTGTGCACGATACAGCTGCACAGACATCTGAATCC
ACAGGTTTCAACTCAAATAGTTCTAGGAGATCTCGTCCATCTTTCCTCGACTCTCTTAATGTGTCTAGATCGTCATCTAGTAGTTATGTCCAACGGACTG
AACCAGAGGATTCATTTATAATCAATACTTCCAAATCAAACGGCATTGATGCTTTAGGATCATCTGCTTTCCAGAAGCTTCCTGTGGAGACCAAAACTGA
CAGGAGTTTATCAGAGATGGCTTCTTCAAATATGCCTAGTTCAGTTGATAATGCAACAAAATTTTCAGTTTCTCTTACTAATGGGGTTGGTATAATGAAC
ACTAATACTAATGAGAACATTATGGAGAGAAAACATGAGTTTTATCAACCCATGCAAAATGAAGATTTTTCTGCTCTGGAACAGCATATTGAAGACTTGA
CACAAGAAAAATTCTCTTTGCAACGAGCTCTTGAAGCTTCACGTGCTTTAGCAGAGTCCTTGGCTGCTGAAAATTCATCATTGACAGATAGCTACAACCA
ACAGAGAGGTGTTGTGAACCAACTGAAATCTGATATGGAGCAGTTACAGGAAGAAATCAAGATCCATTTGGTGGAACTCGAGTCTGTCAAAATTGCATGT
GCAAATGCACAGCTCGAGTGTAATGCTGCTGATGAACGAGCTAAGCTACTGGCTTCTGAAGTTATTAGTTTGGAAGAGAAGGCACTCAGGCTAAGATCTA
GTGAGCTAAAGCTGGGGAGGCAATTAGAGAACTCACAGGCTGAGATAACTTCATACAAAAAGAAAATGTCCAGCCTGGAGAAAGATCGTCAGGATTTGCA
GTCAACAATTGATGCTCTCCAAGAAGAGAAGAAACTATTGCAATCCAAGCTACGTAAAGCTTCTGTAACTGAAAAGTCCCCAGGTGTAAGCAGGAGTGCT
GAGAAAAAAAATGTAGCAACATCGACAGAAGATCTAGATGACATCCCAGTGACTTCCAGCCAGGAAACACATGGTACTTCGTCTGTTCCTAGAAGTGATG
CTACTGATTTTCCCATGCTACCTGAAAATGGTCAGTCAAATCTTGAAGCTTCATCTGTGTACATTCCATCAGATCAAATGAGAATGATTCAAAACATTAA
CACAATACTTTCCGAGCTCGCATTGGAAAAAGAAGAGTTGATGCATGCTTTGACATCTGAGTCATCTCAGTGCTCCAAGCTAAAGGATTTGAACAATGAA
TTGTCGCGTAAACTTGAGGTTCAAACTCAAAGATTAGAGCTTTTGACTGCTCAAAGTATGGCCAATGAAAATATCCCGGCAAGGTTGCCCAATTCTCATA
CCGTGCAGGACAGCAATACATATGCAGATGAAGGTGATGAGGTGGTGGAAAGGGTTTTAGGGTGGATTATGAAGCTCTTTCCTGGAGGACCATCCAGACG
AAGAACAGGCAAGCGTCTTTGA
AA sequence
>Potri.010G062000.1 pacid=42798543 polypeptide=Potri.010G062000.1.p locus=Potri.010G062000 ID=Potri.010G062000.1.v4.1 annot-version=v4.1
MASAQALPGSRKQEHLEAGKRRLEEFRKKKAAERAKKAAPTSQPHALDVSLDQKQLLETEHARLTDSDGVGTSDGPGRPVEPIGASMNNGNKIYITEKVE
LSSLKDSEPSRPSLSDYSTSFSGITQKHTNHFDSNRHDASGLAGSANVKYGQETEKMNNESGIYTGSQGDRSSSDHSIVSGFYGSSSQSSLYGRELLQSK
ENNISLKHSVVDNDSTHFLTSYQSSASSEQQTFKPSYSSFPATVVDSTLPNMKLRDSDSEVEQDMRFNYPMNLDFGERNFSSSTSNLRTVHDTAAQTSES
TGFNSNSSRRSRPSFLDSLNVSRSSSSSYVQRTEPEDSFIINTSKSNGIDALGSSAFQKLPVETKTDRSLSEMASSNMPSSVDNATKFSVSLTNGVGIMN
TNTNENIMERKHEFYQPMQNEDFSALEQHIEDLTQEKFSLQRALEASRALAESLAAENSSLTDSYNQQRGVVNQLKSDMEQLQEEIKIHLVELESVKIAC
ANAQLECNAADERAKLLASEVISLEEKALRLRSSELKLGRQLENSQAEITSYKKKMSSLEKDRQDLQSTIDALQEEKKLLQSKLRKASVTEKSPGVSRSA
EKKNVATSTEDLDDIPVTSSQETHGTSSVPRSDATDFPMLPENGQSNLEASSVYIPSDQMRMIQNINTILSELALEKEELMHALTSESSQCSKLKDLNNE
LSRKLEVQTQRLELLTAQSMANENIPARLPNSHTVQDSNTYADEGDEVVERVLGWIMKLFPGGPSRRRTGKRL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G23980 KOS1, BLI KOLD SENSITIV 1, BLISTER (.1) Potri.010G062000
[exp]
0 1
AT1G79830 GC5 golgin candidate 5 (.1.2.3.4) Potri.003G052100
[exp]
4.47 0.9004
AT2G22125 POM2, CSI1 POM-POM 2, cellulose synthase-... Potri.005G080100
[exp]
6.32 0.8824
AT2G44610 RAB6, AtRABH1b,... Ras-related small GTP-binding ... Potri.002G135500
[exp]
6.63 0.8784 Pt-RAB6.1
AT2G03480 QUL2 QUASIMODO2 LIKE 2 (.1.2) Potri.008G094800
[exp]
12.00 0.8884
AT2G41740 ATVLN2, VLN2 villin 2 (.1) Potri.006G050200
[exp]
14.49 0.8875 VLN2.1
AT1G12420 ACR8 ACT domain repeat 8 (.1) Potri.001G115600
[exp]
19.41 0.8639 Pt-ACR7.1
AT2G30910 ARPC1B, ARPC1, ... actin-related protein C1A (.1.... Potri.014G141700
[exp]
19.67 0.8796 Pt-ARPC1.1
AT4G33330 PGSIP3, GUX2 glucuronic acid substitution o... Potri.014G029900
[exp]
20.24 0.8791
AT5G15630 IRX6, COBL4 IRREGULAR XYLEM 6, COBRA-LIKE4... Potri.015G060100
[exp]
21.35 0.8797
AT5G66310 ATP binding microtubule motor ... Potri.007G014800
[exp]
22.75 0.8800

Potri.010G062000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.