Plant FIBer expression Database

Potri.010G062300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G04620 775 / 0 HCAR 7-hydroxymethyl chlorophyll a \(HMChl\) reductase, coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10043145
[exp]
783 / 0 AT1G04620 767 / 0.0 7-hydroxymethyl chlorophyll a \(HMChl\) reductase, coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family (.1)
Lus10032607
[exp]
783 / 0 AT1G04620 773 / 0.0 7-hydroxymethyl chlorophyll a \(HMChl\) reductase, coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family (.1)
Lus10043143
[exp]
171 / 3e-52 AT1G04620 163 / 6e-50 7-hydroxymethyl chlorophyll a \(HMChl\) reductase, coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04422 FrhB_FdhB_N Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term
PF04432 FrhB_FdhB_C Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus
Representative CDS sequence
>Potri.010G062300.1 pacid=42796976 polypeptide=Potri.010G062300.1.p locus=Potri.010G062300 ID=Potri.010G062300.1.v4.1 annot-version=v4.1
ATGATGACTTCAATCTCATGCAAGCTCTCACTACCAATCATTTCCTCATCATCTTCTTCTTCGAACTCCAATTCCTCAAAGAAGTACTCAGCGAAGGTAA
CAAGAGAGGACTGGAGGCAACGTTCCAAACCCATTCCACCAGGTGGCATTTATCCAGCAAAAGACCACTGCAGTCAATGTGGCTTATGTGATACTTACTA
TGTAGCCCATGTCAAGAATGCTTGTGCTTTTCTAGGTGATGGAATGTCCAAAATCGAAGGTTTGGAACCTGTAGTCCATGGCAGAGGGAGGAAGGCAGAT
TCTTTTGATGAGGCATACTTTGGGGTCCATGAGGAGCTTTTGTATGCTCGTAAAACAAAGCCTGTTGAAGGAGCTCAATGGACCGGAATAGTGACTTCTA
TTGCAATTGAGATGCTGAAATCTGGCATGGTCGAGGCTGTTATATGTGTACAGAGTGATCCAGAGGACAGATTCTCTCCCAGGCCTGTTTTAGCCAGGAC
ACCAGATGAAGTTCTAGCAGCAAAAGGAGTCAAGCCAACACTATCCCCTAATCTGAATACCCTTGCACTGGTTGAGGCTGCTGGTGTTAAGCGTCTTCTT
TTCTGTGGCGTGGGTTGCCAAGTGCAAGCATTAAGATCTGTGGAGCACCATCTGAATTTGGACAAGCTTTATGTACTGGGCACCAACTGTGTGGATAACG
GAACCCGAGAAGGGCTTGATAAGTTTCTAAAGGCTGCTAGTGATGAACCAGAAACTGTTCTCCATTACGAGTTTATGCAAGACTACAAGGTCCATTTGAA
GCACTTGGATGGCCGTATTGAAGAGGTTCCTTATTTCTGTCTGCCAGCAAACGAGTTAGTTGATGTTATTGCACCTTCATGCTATAGCTGCTTCGACTAC
ACGAATGCTTTAGCGGATCTGGTGGTTGGATACATGGGTGTGCCGAAGTATCCTGGGGTCAGCATGACACAACATCCACAGTATATTACAGTAAGAAATG
AACGAGGAAGAGAAATGATTGGTTTGGTAAAAAACCTATTGGAGATTACCCCAACAATCAATAGTGGTGACCGGAGACCATTTGTTATGGAGACTGTCAA
TGCTGATGATAATGCAAAGCTGGGAAAGGGTCCTTCTCAACCTCTCCCAAAGTTCATTGGAAATTTTATAGCGTTTTTACTAAACTTGGTTGGTCCAAAG
GGTCTGGAATTTGCTCGTTACTCACTAGACTACCATACCATCAGAAACTATTTGTACACAAACCGTACTTGGGGAAAAGATAGAGCTGACAGGCACACAC
CTTCATACGCGAAGAAAATTGTGGAATCATACAACAAGAATGGTCAGATTGATCTGATGCTACAGAACAAGTGA
AA sequence
>Potri.010G062300.1 pacid=42796976 polypeptide=Potri.010G062300.1.p locus=Potri.010G062300 ID=Potri.010G062300.1.v4.1 annot-version=v4.1
MMTSISCKLSLPIISSSSSSSNSNSSKKYSAKVTREDWRQRSKPIPPGGIYPAKDHCSQCGLCDTYYVAHVKNACAFLGDGMSKIEGLEPVVHGRGRKAD
SFDEAYFGVHEELLYARKTKPVEGAQWTGIVTSIAIEMLKSGMVEAVICVQSDPEDRFSPRPVLARTPDEVLAAKGVKPTLSPNLNTLALVEAAGVKRLL
FCGVGCQVQALRSVEHHLNLDKLYVLGTNCVDNGTREGLDKFLKAASDEPETVLHYEFMQDYKVHLKHLDGRIEEVPYFCLPANELVDVIAPSCYSCFDY
TNALADLVVGYMGVPKYPGVSMTQHPQYITVRNERGREMIGLVKNLLEITPTINSGDRRPFVMETVNADDNAKLGKGPSQPLPKFIGNFIAFLLNLVGPK
GLEFARYSLDYHTIRNYLYTNRTWGKDRADRHTPSYAKKIVESYNKNGQIDLMLQNK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G04620 HCAR 7-hydroxymethyl chlorophyll a ... Potri.010G062300
[exp]
0 1
AT3G06510 SFR2, ATSFR2 SENSITIVE TO FREEZING 2, Glyco... Potri.010G149500
[exp]
2.44 0.9396 Pt-SFR2.2
AT3G05030 ATNHX2, NHX2 sodium hydrogen exchanger 2 (.... Potri.013G026600
[exp]
2.82 0.9268
Potri.001G400200
[exp]
3.31 0.9160
AT3G02690 nodulin MtN21 /EamA-like trans... Potri.012G145300
[exp]
7.21 0.9397
AT1G54570 Esterase/lipase/thioesterase f... Potri.013G033600
[exp]
8.48 0.9314
AT5G54290 CcdA cytochrome c biogenesis protei... Potri.001G406700
[exp]
8.83 0.9338
AT5G52450 MATE efflux family protein (.1... Potri.012G051900
[exp]
9.94 0.9253
AT2G29650 PHT4;1, ANTR1 anion transporter 1, phosphate... Potri.009G043800
[exp]
10.72 0.9310
AT1G54570 Esterase/lipase/thioesterase f... Potri.005G046700
[exp]
12.64 0.9188
AT1G02630 Nucleoside transporter family ... Potri.006G068100
[exp]
20.73 0.8746

Potri.010G062300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.