Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04610 657 / 0 YUC3 YUCCA 3 (.1) AT2G33230 627 / 0 YUC7 YUCCA 7 (.1) AT4G28720 593 / 0 YUC8 YUCCA 8, Flavin-binding monooxygenase family protein (.1) AT5G43890 566 / 0 YUCCA5, SUPER1, YUC5 YUCCA5, SUPPRESSOR OF ER 1, Flavin-binding monooxygenase family protein (.1) AT1G04180 558 / 0 YUC9 YUCCA 9 (.1) AT5G25620 471 / 9e-164 YUC6 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) AT5G11320 462 / 3e-160 YUC4 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) AT4G13260 461 / 1e-159 YUC2 YUCCA2, Flavin-binding monooxygenase family protein (.1) AT4G32540 444 / 2e-153 YUC1, YUC YUCCA 1, YUCCA, Flavin-binding monooxygenase family protein (.1) AT1G48910 336 / 2e-111 YUC10 YUCCA 10, Flavin-containing monooxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G174600 [exp] 771 / 0 AT1G04610 686 / 0.0 YUCCA 3 (.1) Potri.002G254200 [exp] 637 / 0 AT4G28720 694 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Potri.006G243400 [exp] 489 / 2e-170 AT5G25620 608 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.018G036800 [exp] 483 / 3e-168 AT5G25620 576 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.006G248200 [exp] 477 / 3e-166 AT5G11320 598 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.007G028200 [exp] 474 / 6e-165 AT5G25620 495 / 5e-175 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.018G033200 [exp] 462 / 4e-160 AT5G11320 546 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.002G207400 [exp] 344 / 1e-114 AT1G48910 429 / 3e-150 YUCCA 10, Flavin-containing monooxygenase family protein (.1) Potri.016G003300 [exp] 341 / 3e-113 AT1G21430 436 / 7e-153 Flavin-binding monooxygenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035244 [exp] 683 / 0 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10023695 [exp] 677 / 0 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10022851 [exp] 597 / 0 AT4G28720 666 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Lus10043142 [exp] 576 / 0 AT1G04610 599 / 0.0 YUCCA 3 (.1) Lus10011274 [exp] 566 / 0 AT4G28720 643 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Lus10008092 [exp] 464 / 5e-161 AT5G11320 575 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10013125 [exp] 462 / 1e-160 AT5G11320 579 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10023637 [exp] 452 / 1e-156 AT4G13260 542 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10011093 [exp] 453 / 2e-156 AT4G13260 566 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10024023 [exp] 447 / 1e-154 AT5G25620 479 / 7e-169 YUCCA6, Flavin-binding monooxygenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00743 [poplar] [flax] FMO-like Flavin-binding monooxygenase-like
Representative CDS sequence Show only first row Show all	>Potri.010G062400.2 pacid=42799064 polypeptide=Potri.010G062400.2.p locus=Potri.010G062400 ID=Potri.010G062400.2.v4.1 annot-version=v4.1 ATGGCCATGACCCTCCCCTATTTAACCCCTTCCGCCACCTCCTTCTCCCCTACACCCTTCACTTCAAACAAATTACATTTTATTCTCCTCTCGACTCTTC GTCCTATCCATCTTTCCACACAAACTTCGAGCTTGCTAGTTTCTTCATTTGGAAGACAGCATCCCCGTCATTCTTTTCTCCTCTCTCTAATCTTCTATTT CCCACTTTGGAGATTAACTACGTTTTGTTCAAAGACTTGTCCTTTTCTCTTAATCCCTTCTTTCCATTTTAAAGAGCCAACACACACACTCATCTTAATG TATAACACTTGTCTTAAAATACCAGACATGTTTCCAACTTCTGGTCCTAATCATGGCTTCTTTGCTCACCGATGTGTATGGGTGAACGGACCTGTCATAG TTGGGGCTGGCCCTTCAGGTCTAGCTGTTGGTGCTGGCCTTAAAAGACAAGGGGTGCCATTCGTTATACTCGAAAGAGCAAACTGCATTGCCTCTCTTTG GCAGAACCGCACCTATGATCGCCTCAAGCTTCACCTCCCTAAGCAATTCTGTCAACTACCGGACTTCCCATTTCCAGAGGAGTTCCCAGAATATCCCACC AAATATCAGTTTATTAGCTATCTTGCATCTTATGCTAAGCATTTCGATATAAATCCACATTTCAATGAAATTGTGCAGTCTGCGAAGTATGATGAGACCT TTGGTTTGTGGCGAGTTAAAACCATTTCGACAAGCAGTTCAGATATTCCTAGTGAAGTTGAATACATTTGCAAATGGCTTGTGGTGGCCACTGGAGAGAA TGCAGAGAAAGTTCTGCCAGAGTTTGAAGGCTTGCAGGACTTTGGTGGCCATGTTATGCATGCTTGCGACTACAAATCCGGTGAAAGTTATCATGGAAAG CGTGTGCTTGTTGTTGGCTGTGGCAATTCAGGCATGGAGGTCTCTCTTGATCTATGCAACCATAACGCAAGCCCATCAATGGTTGTTCGCAGCTCGGTTC ATGTCTTGCCTAGGGAAGTTCTTGGGAGATCAACATTTGAGTTGGCAGTAACAATGATGAAATGGCTGCCACTTTGGATGGTCGACAAGGTATTATTACT TCTTTCCAGGCTAATCCTCGGAAATGTTGAAAAATATGGTCTGAAAAGGCCATGTTTAGGACCTTTACAGCTCAAGGATACGCAAGGAAAAACCCCAGTA TTGGACATTGGTGCACTAGAAAAAATAAGATCTGGTAAGATCAAGGTTGTCCCTGGAATCAAGAGATTCTCTAGTGGCAAAGTGGAGCTTGTTAACAGTG AAATTCTTGAGATCGATTCTGTAATTCTGGCAACTGGGTATCGCAGCAATGTACCTTCATGGCTAAAGGAGAATGAATTCTTTACTGAAGACGGGATTCC TAAAAATCCATTCCCTAATGGATGGAAAGGCAATGCCGGGCTTTATGCAGTTGGGTTCACAAGGAGGGGTCTATCTGGGGCGTCTCTAGATGCTATGAGC GTAGCACTTGACATTGCCAAAATCTGGAAAGAAGAAACCAAGCAAAAAAAGAAAACTGTGGCAGCTCGTCACAGGAGATGCATTTCACATTTCTGA
AA sequence Show only first row Show all	>Potri.010G062400.2 pacid=42799064 polypeptide=Potri.010G062400.2.p locus=Potri.010G062400 ID=Potri.010G062400.2.v4.1 annot-version=v4.1 MAMTLPYLTPSATSFSPTPFTSNKLHFILLSTLRPIHLSTQTSSLLVSSFGRQHPRHSFLLSLIFYFPLWRLTTFCSKTCPFLLIPSFHFKEPTHTLILM YNTCLKIPDMFPTSGPNHGFFAHRCVWVNGPVIVGAGPSGLAVGAGLKRQGVPFVILERANCIASLWQNRTYDRLKLHLPKQFCQLPDFPFPEEFPEYPT KYQFISYLASYAKHFDINPHFNEIVQSAKYDETFGLWRVKTISTSSSDIPSEVEYICKWLVVATGENAEKVLPEFEGLQDFGGHVMHACDYKSGESYHGK RVLVVGCGNSGMEVSLDLCNHNASPSMVVRSSVHVLPREVLGRSTFELAVTMMKWLPLWMVDKVLLLLSRLILGNVEKYGLKRPCLGPLQLKDTQGKTPV LDIGALEKIRSGKIKVVPGIKRFSSGKVELVNSEILEIDSVILATGYRSNVPSWLKENEFFTEDGIPKNPFPNGWKGNAGLYAVGFTRRGLSGASLDAMS VALDIAKIWKEETKQKKKTVAARHRRCISHF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04610		YUC3	YUCCA 3 (.1)		Potri.010G062400 [exp]	0	1
AT3G19870			unknown protein		Potri.008G085300 [exp]	3.00	0.7353
AT2G16050			Cysteine/Histidine-rich C1 dom...		Potri.010G204600 [exp]	9.27	0.7382
AT1G52700			alpha/beta-Hydrolases superfam...		Potri.003G060300 [exp]	10.19	0.6974
AT1G55230			Family of unknown function (DU...		Potri.003G216500 [exp]	14.56	0.7304
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.009G064800 [exp]	23.43	0.7207
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.017G074000 [exp]	24.85	0.7241
AT1G76140			Prolyl oligopeptidase family p...		Potri.002G013900 [exp]	28.24	0.6954
AT3G22470			Pentatricopeptide repeat (PPR)...		Potri.016G025600 [exp]	31.98	0.7054
AT1G74960		ATKAS2, KAS2, F...	ARABIDOPSIS BETA-KETOACYL-ACP ...		Potri.018G062900 [exp]	35.21	0.6840
					Potri.008G164600 [exp]	37.78	0.6925

Compare expression of checked genes

Potri.010G062400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.