Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43900 127 / 5e-35 XI-6, XI-2, ATMYA2, MYA2 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) AT4G28710 127 / 8e-35 ATXIH, XIH MYOSIN XI H, Myosin family protein with Dil domain (.1) AT1G04160 124 / 1e-33 XI-B, XI-8, ATXIB, XIB MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) AT5G20490 115 / 8e-31 XI-17, ATXIK, XIK MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) AT2G33240 105 / 2e-27 ATXID, XID myosin XI D (.1) AT1G04600 102 / 3e-26 ATXIA, XIA myosin XI A (.1) AT1G08730 101 / 8e-26 PCR43, ATXIC, XIC MYOSIN XI C, Myosin family protein with Dil domain (.1) AT1G54560 101 / 9e-26 PCR1, ATXIE, XIE MYOSIN XI E, Myosin family protein with Dil domain (.1) AT1G17580 97 / 3e-24 XI-1, ATMYA1, MYA1 MYOSIN XI 1, ARABIDOPSIS MYOSIN 1, myosin 1 (.1) AT2G31900 96 / 4e-24 ATMYO5, PCR11, ATXIF, XIF MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G174500 [exp] 160 / 1e-46 AT5G43900 2206 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Potri.002G254300 [exp] 143 / 1e-40 AT1G04160 2412 / 0.0 MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) Potri.006G145700 [exp] 118 / 1e-31 AT5G20490 2580 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.001G199200 [exp] 113 / 4e-30 AT5G20490 2448 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.013G043900 [exp] 105 / 2e-27 AT1G54560 2512 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.019G013800 [exp] 104 / 6e-27 AT1G54560 2616 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.001G233100 [exp] 102 / 5e-26 AT2G31900 2385 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.009G025300 [exp] 101 / 6e-26 AT2G31900 2363 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.006G220000 [exp] 71 / 3e-15 AT4G33200 2352 / 0.0 MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032597 [exp] 130 / 4e-36 AT5G43900 1925 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10022850 [exp] 130 / 8e-36 AT5G43900 2380 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10043153 [exp] 129 / 1e-35 AT5G43900 1250 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10003315 [exp] 115 / 1e-30 AT5G20490 2479 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10008461 [exp] 114 / 3e-30 AT2G31900 809 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Lus10011919 [exp] 108 / 3e-28 AT5G43900 978 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10005521 [exp] 105 / 3e-27 AT1G54560 2686 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Lus10021570 [exp] 96 / 1e-23 AT5G20490 2587 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10023696 [exp] 90 / 1e-21 AT5G43900 1841 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10017160 [exp] 86 / 3e-20 AT5G20490 2476 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Potri.010G062520.1 pacid=42796981 polypeptide=Potri.010G062520.1.p locus=Potri.010G062520 ID=Potri.010G062520.1.v4.1 annot-version=v4.1 ATGTATCTTGCGAGTAAAGCTTACAACAACTTGCGCTTCTCAGCTGTCTCCATTCAGTCAGGTATACGTGGAATGGCTGCTTGTTATGAGCTTTGGTTCA GGAAGCAGATGAGAGCTGTGATTGTAATTCAGCGAGCAGCAATCGCCACTCAATGTGCCTGGAGAGGGCAGGTTGCACGTAAAGAATTGTGGAAGCTTAA AATGGCTGCTAAGGAGACTGGTGCTCTCCAAGCTGCAAAAAGCAAACTGGAAAAGGAAGTTGAAGAACTAACCTGGCGTCTGCAGCTGGAAAAACGAATG AGGGCTGACCTAGAGGAATCCAAAACACAGGAAATGCAAAATTATGTACAGCATTGCAAGAAGTGCAACCTGAACTCCAAGAATCTAAAGCTCTACTAA
AA sequence Show only first row Show all	>Potri.010G062520.1 pacid=42796981 polypeptide=Potri.010G062520.1.p locus=Potri.010G062520 ID=Potri.010G062520.1.v4.1 annot-version=v4.1 MYLASKAYNNLRFSAVSIQSGIRGMAACYELWFRKQMRAVIVIQRAAIATQCAWRGQVARKELWKLKMAAKETGALQAAKSKLEKEVEELTWRLQLEKRM RADLEESKTQEMQNYVQHCKKCNLNSKNLKLY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Potri.010G062520 [exp]	0	1
					Potri.002G200150 [exp]	4.89	0.7966
AT5G53592			FBD-like domain family protein...		Potri.001G401850 [exp]	6.48	0.7659
AT3G19620			Glycosyl hydrolase family prot...		Potri.001G294700 [exp]	6.48	0.7817
					Potri.005G256201 [exp]	10.95	0.7630
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Potri.002G239100 [exp]	17.74	0.7432
AT4G33060			Cyclophilin-like peptidyl-prol...		Potri.006G225167 [exp]	24.55	0.7555
					Potri.004G011375 [exp]	25.29	0.7493
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Potri.005G197400 [exp]	33.31	0.7038
AT5G04290		SPT5L, KTF1	SPT5-LIKE, kow domain-containi...		Potri.010G228766 [exp]	35.35	0.7644
AT5G58510			unknown protein		Potri.001G280900 [exp]	41.42	0.7445

Compare expression of checked genes

Potri.010G062520 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.