Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13550 693 / 0 triglyceride lipases;triglyceride lipases (.1) AT5G18640 55 / 1e-07 alpha/beta-Hydrolases superfamily protein (.1) AT5G18630 54 / 4e-07 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT5G04220 52 / 8e-07 SYT3, NTMCTYPE1.3, ATSYTC ,NTMC2T1.3 ,NTMC2TYPE1.3 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G70810 48 / 4e-06 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G48590 48 / 7e-06 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) AT1G20080 49 / 1e-05 SYT2, NTMCTYPE1.2, ATSYTB ,NTMC2T1.2 ,NTMC2TYPE1.2 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G23140 45 / 3e-05 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G03370 46 / 0.0001 C2 calcium/lipid-binding and GRAM domain containing protein (.1) AT2G01540 44 / 0.0001 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G174300 [exp] 109 / 1e-27 AT4G13550 117 / 4e-31 triglyceride lipases;triglyceride lipases (.1) Potri.010G019500 [exp] 54 / 3e-07 AT5G18640 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G223900 [exp] 52 / 2e-06 AT5G04220 598 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.008G038300 [exp] 51 / 3e-06 AT5G04220 629 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.002G019800 [exp] 49 / 1e-05 AT1G20080 846 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.005G241700 [exp] 49 / 1e-05 AT1G20080 816 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.012G047100 [exp] 47 / 1e-05 AT3G17980 251 / 2e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G153100 [exp] 49 / 2e-05 AT4G16820 575 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Potri.003G081500 [exp] 48 / 3e-05 AT4G16820 558 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023696 [exp] 709 / 0 AT5G43900 1841 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10004394 [exp] 637 / 0 AT4G13550 612 / 0.0 triglyceride lipases;triglyceride lipases (.1) Lus10033968 [exp] 53 / 8e-07 AT5G18640 463 / 5e-164 alpha/beta-Hydrolases superfamily protein (.1) Lus10003910 [exp] 49 / 2e-05 AT1G03370 694 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Lus10001915 [exp] 49 / 3e-05 AT1G03370 1438 / 0.0 C2 calcium/lipid-binding and GRAM domain containing protein (.1) Lus10005069 [exp] 48 / 3e-05 AT2G20990 766 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Lus10037993 [exp] 47 / 8e-05 AT5G04220 701 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10004364 [exp] 46 / 0.0001 AT4G16820 587 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10040158 [exp] 46 / 0.0001 AT4G16820 573 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10014127 [exp] 45 / 0.0002 AT2G20990 821 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0028 [poplar] [flax] AB_hydrolase PF01764 [poplar] [flax] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Potri.010G062700.4 pacid=42797441 polypeptide=Potri.010G062700.4.p locus=Potri.010G062700 ID=Potri.010G062700.4.v4.1 annot-version=v4.1 ATGGCCATGGCAACTTCTCTCCACCTAAACCACACATTTTATCACCGTTTCACTCCTACTTCGCATATGAGTCGAAATTTGAACTTTTACCGGCGGTTTT CGTCTTCATTTTCCTGGAAAGCTAGGGTTTTAACTTTGAAGAAGAAGCACTACCGAGGCACCGGACATGGAGTTTTCTCGTCGAGTATTATTAAAGCGAA CAATACAAATAATAAGGAGATCGACGAGGTTTCCGTTCAAGAAGAGAAAGAGAACGAGATGGAACGGCCTCCTTTTGATATCAATCTAGCTGTAGTTCTT GCTGGTTTCGCTTTCGAAGCCTACACTAGCCTCCCTGAAAACGTAGGGAAGCGCGAGGTTGATGCTGCAGATTGTAAGACTGTGTATCTTTCAGAGTCAT TTGTACGCGAGATATATGATGGCCAGTTGTTCATAAAATTGACAAAGGGCTTTGATTTGCCAGCCATGGATCCATGGGGAACAAGTGATCCTTATGTGGT TATGGAACTGGATGGTCAGGTTGTCAAAAGCAAGGTCAAATGGGGGAAAAAGAAGCCAACTTGGAACGAGGACTTCACCATTAACATTAAGCTGCCTCCG ACCAAAAATCTTCAGATTGCAGCTTGGGATGCAAACCTTGTAACTCCACACAAGCGCATGGGGAACACAAGCATTGGTCTGGAAAGCCTCTGTGACGGAA ACTTGCATGAGGTGGTGGTTGAACTGGAAGGGATGGGCGGTGGCGGAAAGTTGCAGTTGGAGGTTAAATACAAAACTTTTGATGAAATTGATGAAGAAAA AAGGCCGTGGAGGCTCCCCTTTGTGTCAGATTTTCTTCGCAAAAATGGTTTTGAATCAGCTCTAAAAATGGTTGTTGGCTCAGAAACCATGCCAGCACGT CAGTTTGTAGAATATGCTTTTGGGCAGTTGAAGTCATTTAATGTTCCATATGTTTGGACGGATCAAGTTTCAAACAGTAAGGACTTGGGTGCAGCAAATT CCAACCACTCTGTTGTGTCGGACATGCCTTTGCCTTCAGAAACAAAGAGTACCACAGAAGTCCCTGTGTGTGACACGAACCGTGATGGAGACAGTAACTT GGTATTATCCCAAGCTGATAATGACTGCTTACGTAATTTGGGTGCCACAGAAGCTGGGGTAGCTACGCAATCAGATAAACAATTTTGGAAGAACTTTGCT GATGTTATCAGCCAAACTGTTGCTCAGAAACTTGGTTTCTCTGTTTCTCTGGAATTAAAGTGGGATGAATTTGACTTATTGAACAGAATTGGATTGCAGT CACAAAAGATTGCCGAAGCGGGTTATGTTGAGTCAGGGCTTGCAACTCCAGAGGGTCAGAAGGTGGACAGTGATAAAGCAAGTGCCCCACTTACCATAAG CAAGATTCAATCTTCACTTCCAGAAATAAAGAAGGTGACACAGGATTTGTTAAGGCAAACTGATTCTGTTCTGGGAGCATGGATGGTTTTGACTACTGCT GTTTCTAAATTAAATAAGGAAGAAAATGTTTCAGGAAAGAGTTCTTCTGATAGTGAGAAGCTAATTAGCTCTTCGAATGGAACCGCATTGGAAGACAAGA AATCTGAGGAAATGAGAGTGCTCTTTTCTACTGCTGAAAGTGCTATGGAGGCTTGGGCAATGCTTGCTACTTCACTGGGCCATTCAAGTTTTATCAAGTC TGAATTTGAGAAGATATGCTTTCTAGACAATTCATCCACAGATACACAGGTGGCAATTTGGCGTGACAATGCAAGGAAAAGATTAGTTGTTGCTTTCAGG GGCACAGAACAAGTAAGCTGGAAGGATTTGCGAACTGATTTAATGGTAGTTCCTACAGGGCTAAATCCTGAAAGGATTGGTGGAGATTTTAAACAAGAAG TTCAGGTTCATAGTGGTTTTTTAAGTGCTTATGATTCAGTCAGGATACGAATCATCTCTATCATTAAACTATTAATTAGCTACGTAGATAATGGAGCCGA GCCACCATTTAAATGGCATGTCTATGTAACTGGTCATAGTTTGGGTGGTGCATTGGCTACCCTGCTTGCTCTTGAACTTTCATCGAGTCAACTAGTAAAG CGTGGTGCGATTTCTGTGGCTATGTATAACTTTGGATCTCCTAGAGTTGGTAACAAAAAGTTTGCAGAAGTTTATAATCAGAAAGTTAAAGATAGCTGGA GGGTTGTGAACCACAGAGACATTGTACCTACTGTTCCTCGCTTGATGGGTTATTGCCATGTAGCTCAACCTGTGTATCTAGCAACTGGAGAACTAGAAGA TGCTTTGGTAAATTTGGAGCTTTTGAAAGATGGCTACCAAGGTGATTTCATTGGGGAGTCCACACCAGATGTTGTTGTCAGTGAATTTATGAAAGGTGAG AAGGAGCTCATTGAGAAAATACTGCAGACTGAAATAAATATATTCCGTTCAATTCGAGATGGAAGTGGGCTTATGCAGCATATGGAGGATTTCTATTACA TCACACTGCTTGAGAACGTGAGATCAAACTACCAGCCTCTTGAAAGGGTAGAAAGCAGTGGAAGAGATAGCATCCCAACCAGCGAAGATGGCAGTAACAT CTGA
AA sequence Show only first row Show all	>Potri.010G062700.4 pacid=42797441 polypeptide=Potri.010G062700.4.p locus=Potri.010G062700 ID=Potri.010G062700.4.v4.1 annot-version=v4.1 MAMATSLHLNHTFYHRFTPTSHMSRNLNFYRRFSSSFSWKARVLTLKKKHYRGTGHGVFSSSIIKANNTNNKEIDEVSVQEEKENEMERPPFDINLAVVL AGFAFEAYTSLPENVGKREVDAADCKTVYLSESFVREIYDGQLFIKLTKGFDLPAMDPWGTSDPYVVMELDGQVVKSKVKWGKKKPTWNEDFTINIKLPP TKNLQIAAWDANLVTPHKRMGNTSIGLESLCDGNLHEVVVELEGMGGGGKLQLEVKYKTFDEIDEEKRPWRLPFVSDFLRKNGFESALKMVVGSETMPAR QFVEYAFGQLKSFNVPYVWTDQVSNSKDLGAANSNHSVVSDMPLPSETKSTTEVPVCDTNRDGDSNLVLSQADNDCLRNLGATEAGVATQSDKQFWKNFA DVISQTVAQKLGFSVSLELKWDEFDLLNRIGLQSQKIAEAGYVESGLATPEGQKVDSDKASAPLTISKIQSSLPEIKKVTQDLLRQTDSVLGAWMVLTTA VSKLNKEENVSGKSSSDSEKLISSSNGTALEDKKSEEMRVLFSTAESAMEAWAMLATSLGHSSFIKSEFEKICFLDNSSTDTQVAIWRDNARKRLVVAFR GTEQVSWKDLRTDLMVVPTGLNPERIGGDFKQEVQVHSGFLSAYDSVRIRIISIIKLLISYVDNGAEPPFKWHVYVTGHSLGGALATLLALELSSSQLVK RGAISVAMYNFGSPRVGNKKFAEVYNQKVKDSWRVVNHRDIVPTVPRLMGYCHVAQPVYLATGELEDALVNLELLKDGYQGDFIGESTPDVVVSEFMKGE KELIEKILQTEINIFRSIRDGSGLMQHMEDFYYITLLENVRSNYQPLERVESSGRDSIPTSEDGSNI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13550			triglyceride lipases;triglycer...		Potri.010G062700 [exp]	0	1
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Potri.001G085500 [exp]	3.46	0.8136	WNK8.2
AT2G02710		PLPC, PLPB, PLP...	PAS/LOV PROTEIN C, PAS/LOV PRO...		Potri.010G053500 [exp]	3.87	0.8022
AT1G73980			Phosphoribulokinase / Uridine ...		Potri.015G055400 [exp]	5.29	0.8214
AT4G13020		MHK	Protein kinase superfamily pro...		Potri.002G247500 [exp]	11.40	0.7782	MHK.1
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Potri.012G021400 [exp]	13.41	0.8073
AT3G43540			Protein of unknown function (D...		Potri.006G217700 [exp]	13.74	0.7814
AT1G18470			Transmembrane Fragile-X-F-asso...		Potri.012G060100 [exp]	14.49	0.7498
AT3G07370		ATCHIP, CHIP	carboxyl terminus of HSC70-int...		Potri.002G248700 [exp]	16.24	0.7251
AT1G13310			Endosomal targeting BRO1-like ...		Potri.010G128700 [exp]	23.91	0.7486
AT2G39140		PDE328, SVR1	SUPPRESSOR OF VARIEGATION 1, P...		Potri.010G226901 [exp]	26.45	0.7427

Compare expression of checked genes

Potri.010G062700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.