Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23920 908 / 0 BAM1, BMY7, TR-BAMY BETA-AMYLASE 7, beta-amylase 1 (.1) AT4G17090 620 / 0 CT-BMY, BMY8, BAM3 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) AT4G15210 441 / 6e-150 BAM5, AT-BETA-AMY, BMY1, RAM1, ATBETA-AMY REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) AT4G00490 431 / 2e-145 BAM2, BMY9 BETA-AMYLASE 9, beta-amylase 2 (.1) AT2G32290 418 / 8e-140 BAM6, BMY5 BETA-AMYLASE 5, beta-amylase 6 (.1) AT5G55700 392 / 2e-130 BAM4, BMY6 BETA-AMYLASE 6, beta-amylase 4 (.1.2) AT2G45880 368 / 5e-119 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7 (.1) AT5G45300 302 / 7e-94 BZR BAM8, BMY2 BETA-AMYLASE 8, beta-amylase 2 (.1.2) AT5G18670 290 / 9e-91 BAM9, BMY3 BETA-AMYLASE 9, beta-amylase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G174100 [exp] 1079 / 0 AT3G23920 876 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.001G148900 [exp] 630 / 0 AT4G17090 885 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.003G085500 [exp] 615 / 0 AT4G17090 868 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.003G143500 [exp] 483 / 6e-165 AT3G23920 442 / 4e-149 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.001G087600 [exp] 468 / 1e-159 AT3G23920 459 / 3e-156 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.014G083800 [exp] 432 / 7e-146 AT4G00490 799 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Potri.017G040800 [exp] 431 / 5e-145 AT4G15210 764 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Potri.002G159300 [exp] 403 / 2e-132 AT2G45880 858 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Potri.014G083700 [exp] 402 / 3e-132 AT2G45880 863 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004396 [exp] 882 / 0 AT3G23920 848 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10023700 [exp] 832 / 0 AT3G23920 783 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10004398 [exp] 688 / 0 AT3G23920 649 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10001087 [exp] 611 / 0 AT4G17090 781 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10011035 [exp] 601 / 0 AT4G17090 778 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10023698 [exp] 589 / 0 AT3G23920 552 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10040134 [exp] 561 / 0 AT4G17090 735 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10003005 [exp] 551 / 0 AT4G17090 709 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10039701 [exp] 446 / 1e-149 AT4G15210 724 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10039702 [exp] 436 / 1e-147 AT4G15210 694 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF01373 [poplar] [flax] Glyco_hydro_14 Glycosyl hydrolase family 14
Representative CDS sequence Show only first row Show all	>Potri.010G062900.1 pacid=42796779 polypeptide=Potri.010G062900.1.p locus=Potri.010G062900 ID=Potri.010G062900.1.v4.1 annot-version=v4.1 ATGGCAATGAATATAACATTTCAGATCGGAGCTCTAGCTGGAACACCAATCCAAGCAGAATCAATAACGAGCGCAAGCACCGGCAGTGACTCCAGCGCGG CGGCGGCGTGGAAAACTCCAATCCCAAGCATCCGATGCAAAATCATAAAACCGGAAACGATAGAGCAAAAATCACAACCAACAAGCCCTTGCAGGTCTCC TATATTAAGCGGAAGTAACGGCATCCGTCCAGATCTATCAGTGGCATGCCGAGCATTCGCGACAGAAACATTGGAATTTATGACATTGGATGAGAGTAAG GCAGCAGAAGAAGAGAAGATGTATAAAGAGGGGAAGACAGAGAAGGAGAAGGGAGTGCCAGTTTATGTGATGATGCCATTGGATAGTGTAACGATGGGGA ACACGTTGAATAGAAAGAAAGCAATGAATGCTAGTTTGCAGGCGTTGAAGAGTGCAGGTGTGGAAGGGTTGATGGTGGATGTTTGGTGGGGATTAGTGGA GAGAGATGCGCCGGGTGTGTATAATTGGGGAGGGTATACCGAGCTGTTAGAAATGGCTAAACGACATGGTCTCAAGGTTCAAGCTGTTATGTCGTTTCAT CAGTGTGGTGGCAACGTTGGAGATTCTTGCACGATTCCATTACCCAAATGGGCCGTGGAGGAGATTGATAAAGATCAAGACCTTGCATACACTGATCAGT GGGGAAGGAGGAATCATGAGTATATATCACTTGGATGCGATACCCTTCCAGTTCTCAAGGGGAGGACACCTGTGCAATGTTACTCTGATTTTATGCGGGC CTTTAGAGACAACTTCAAACACCTTCTTGGTGACACCATTGTGGAAATCCAAGTGGGAATGGGTCCAGCAGGTGAGCTCCGCTATCCTTCATACCCGGAG CAGAATGGAACCTGGAGATTTCCAGGAATCGGAGCTTTCCAATGTTATGACAAGTATATGTTGAGTAGCTTGAAAGCAGCAGCTGAAGCTGCTGGTAAGC CAGAATGGGGTAGTACAGGCCCTACTGATGCTGGTGAGTACAACAACTGGCCGGAAGACACTCAGTTTTTCAGAAAAGAAGGTGGTGGTTGGACCAGTCC CTACGGTGAATTCTTCCTCACTTGGTACTCTCAGATGCTCTTGGACCATGGTGAGAGAATATTGTCATCAGCAAAGGCAACCTTTGAGAATATTGGTGTA AAGATCTCAGTGAAGATTGCAGGAATTCATTGGCACTATGGAACCCGGTCTCATGCCCCAGAACTCACGGCAGGATATTATAACACAAGATTCAGAGATG GTTACCTTCCTATTGCTCGAATGTTAGCTCGGCATGGTGCTATATTCAATTTCACTTGCATAGAAATGCGTGACCATGAACAGCCACAGGATGCCCTTTG TGCCCCTGAGAAGCTTGTGAGGCAAGTGGCACTAGCAACTCGGGAAGCAGATATCCCTCTTGCCGGGGAAAATGCACTGCCAAGATATGATGAGTACGCA CACGAGCAAATTTTGCAAGCATCATCATTGAATATTGATGAAAGTTCAGATGATAAGGAGATGTGTGCGTTTACGTACTTGAGAATGAACCCTCACTTAT TCCAGCCAGATAACTGGAGACGCTTTGTGGCATTTGTGAAGAAGATGAAGGAAGGGAAGAGTACTGACCGGTGCTGGGAGGAGGTTGAGAGGGAAGCTGA GCATTTTGTGCATGTAAGTCAACCTTTAGTACAGGAGGCTGCTGTGGCTCTCATGCACTAG
AA sequence Show only first row Show all	>Potri.010G062900.1 pacid=42796779 polypeptide=Potri.010G062900.1.p locus=Potri.010G062900 ID=Potri.010G062900.1.v4.1 annot-version=v4.1 MAMNITFQIGALAGTPIQAESITSASTGSDSSAAAAWKTPIPSIRCKIIKPETIEQKSQPTSPCRSPILSGSNGIRPDLSVACRAFATETLEFMTLDESK AAEEEKMYKEGKTEKEKGVPVYVMMPLDSVTMGNTLNRKKAMNASLQALKSAGVEGLMVDVWWGLVERDAPGVYNWGGYTELLEMAKRHGLKVQAVMSFH QCGGNVGDSCTIPLPKWAVEEIDKDQDLAYTDQWGRRNHEYISLGCDTLPVLKGRTPVQCYSDFMRAFRDNFKHLLGDTIVEIQVGMGPAGELRYPSYPE QNGTWRFPGIGAFQCYDKYMLSSLKAAAEAAGKPEWGSTGPTDAGEYNNWPEDTQFFRKEGGGWTSPYGEFFLTWYSQMLLDHGERILSSAKATFENIGV KISVKIAGIHWHYGTRSHAPELTAGYYNTRFRDGYLPIARMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVRQVALATREADIPLAGENALPRYDEYA HEQILQASSLNIDESSDDKEMCAFTYLRMNPHLFQPDNWRRFVAFVKKMKEGKSTDRCWEEVEREAEHFVHVSQPLVQEAAVALMH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23920		BAM1, BMY7, TR-...	BETA-AMYLASE 7, beta-amylase 1...		Potri.010G062900 [exp]	0	1
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Potri.016G105300 [exp]	81.97	0.8090
AT4G34630			unknown protein		Potri.009G121700 [exp]	147.51	0.7917
AT5G08535			D111/G-patch domain-containing...		Potri.008G003100 [exp]	257.76	0.7717

Compare expression of checked genes

Potri.010G062900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.