Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16840 782 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G60990 235 / 5e-69 DEA(D/H)-box RNA helicase family protein (.1) AT4G16630 219 / 2e-60 DEA(D/H)-box RNA helicase family protein (.1) AT1G16280 205 / 9e-58 SWA3, AtRH36 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) AT2G33730 203 / 4e-55 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G77030 194 / 1e-51 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) AT3G22330 184 / 4e-49 ATRH53, PMH2 putative mitochondrial RNA helicase 2 (.1) AT5G26742 184 / 2e-48 EMB1138 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) AT3G22310 177 / 3e-47 ATRH9, PMH1 RNA HELICASE 9, putative mitochondrial RNA helicase 1 (.1) AT3G58570 173 / 3e-45 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G241300 [exp] 229 / 2e-64 AT4G16630 829 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.008G084700 [exp] 220 / 3e-63 AT1G16280 616 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Potri.016G013900 [exp] 214 / 2e-61 AT5G60990 579 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.007G068800 [exp] 213 / 5e-61 AT5G60990 656 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.006G249100 [exp] 212 / 9e-61 AT5G60990 619 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.012G045800 [exp] 216 / 9e-60 AT2G33730 994 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G037200 [exp] 209 / 2e-57 AT2G33730 1058 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G185900 [exp] 193 / 2e-51 AT1G77030 1106 / 0.0 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) Potri.003G098800 [exp] 182 / 4e-49 AT1G31970 726 / 0.0 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004404 [exp] 1050 / 0 AT3G16840 874 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023706 [exp] 476 / 2e-163 AT3G16840 361 / 5e-119 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031761 [exp] 214 / 2e-61 AT5G60990 679 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10042754 [exp] 221 / 7e-61 AT1G16280 983 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10006326 [exp] 216 / 9e-61 AT1G16280 673 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10031182 [exp] 211 / 4e-60 AT5G60990 674 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10029596 [exp] 214 / 6e-60 AT1G16280 674 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10015187 [exp] 208 / 5e-57 AT2G33730 1083 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10028644 [exp] 187 / 2e-49 AT1G77030 1057 / 0.0 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) Lus10018941 [exp] 183 / 7e-48 AT1G77030 1043 / 0.0 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.010G063600.4 pacid=42798449 polypeptide=Potri.010G063600.4.p locus=Potri.010G063600 ID=Potri.010G063600.4.v4.1 annot-version=v4.1 ATGGCCGCCGTTACAGAAGCAGAACCACGAGTATCTTCTAAACAGTCCAACAACAAAAAGGGGAAAAGAAAGCGAACCCATATTGACCCTGAAATCGACC GACTCGACTCACTCCCATGGAACTCTTCCATCTCTCAAGACGATCCTTTCTCTGTTATTGCTGGTTCTCACGAGCTCGAAGGAGGGTTTCTATCACTTGA AGAGATTGACGAGGGTGATTATGGTTTAGAAATTCCTGGTCTTGATAAGAAGGTGAAGAAAGAAAGAAAGAATAAATCCAAGAAACAGAAGGATAGTGAT GCTGATGCTGATGGGGTTGAAGAGGAGGTGGAGGAGGAGGGGATAAACGTGGAGGATAAGAAAAAGAGGAAGAAGAGAAAGAAGAAAAAGAAAGCGAAGG AATCATCAAGGGTTGATGAAACTACTTCTGTTAGCAATAACAAGGATGATGTAGAAGGAGAATCAGTTGACGAGACTGAATTTTATGGATGGAATGAGTT GAGACTTCATCCTCTGCTCATGAAATCGATATATAGGCTTGGGTTCAAGGAACCAACACCAATACAGAAAGCTTGTATTCCTGCCGCAGCTCATCAAGGG AAGGATGTTGTTGGAGCTGCAGAAACTGGCTCGGGCAAAACTCTTGCTTTTGGTTTGCCCATTTTGCAACGTCTCCTCGAGGAACAAGATAAGGCTTCAA ACATGGGTGACAATGTGGGAGAGGAAGCTGAAAGGTTTGCACCAAAAGGTCTTTTGCGTGCTCTCATCATCACTCCAACAAGGGAGCTTGCCATTCAGGT GACAGACCATTTTAAGGAAGCAGCTCATGGTATCAATATTAGGGTGGTTTCAATTGTTGGTGGGATGTCAACAGAGAAGCAGGAAAGACTTTTGAAAGCA AGGCCTGAGATTATTGTTGGGACTCCTGGGAGGTTGTGGGAACTTATGTCAGGAGGGGAAAAGCATCTTGTTGAGTTGCATTCGTTATCATTCTTTGTGC TGGATGAGGCAGATCGAATGATTGAAAATGGACATTTTCGTGAGTTACAGTCTATTATTGACATGCTGCCCATGGCCAGTGGTTCAATTGGAGGACAATC TCAAAGTTCAGAAAATTGCCAAACACTTTCAAACATGCAAATAAAGAAAAGACAAACGTTTGTTTTTTCTGCAACTATAGCATTATCTGCTGATTTTCGC AAGAAGCTAAAGCGTGGCTCATTAAAATCAAAGCAATCAATGGCTGATGGGCTGAATTCCATAGAAATGCTCTCTGAACGAGCTGGAATGAGAGCAAATG CTGCCATCATTGACCTGACAAATGCATCAATCCTCGCAAATAAGCTCGAGGAATCTTTTATAGAATGCAAGGAAGAAGATAAAGATGCTTGCCTGTATTA TATATTGAGTGTTCATGGAAAAGGTCGCACAATTGTTTTCTGTACATCAATTGCAGCTTTGCGCCACACTTCTGCCCTTTTGCGCATCCTAGGCATCAAT GTTTGGACACTTCATGCTCAGATGCAGCAGCGAGCTCGTTTGAAGGCAATAGATCGTTTTCGTTCAAATGAACATGCTATCCTTGTTGCTACAGATGTTG CTGCAAGAGGCCTCGACATCCCTGGTGTCCGAACTGTTGTTCACTATCAGCTTCCACATTCAGCAGAAGTTTATGTTCACCGAAGTGGAAGAACTGCAAG AGCTTGTACTGATGGATGCAGCATTGCCCTTATCTCATCAAATGATACTTCAAAATTTGCCTCTTTGTGCAAATCATTTTCAAAGGAAAGTTTTCAGAGA TTTCCTTTAGAAGAGTCATACATGCAAGAGGTGATGAGACGGCTGTCTCTTGCACGTCAAATAGACAAGATTACAAGAAAGGACTCCCAGGAGAAGGCAA AGAAAACCTGGTTTGAACGAAATGCAGAATCAATTGAGTTAATGGTGGAGAATGATGACAGTGAGGAGGAAAGAGTGAACAATCATAAGCAAAAGAGAGT CACCTCAATGCAACTGAAAAATTTACAGCAGGAGCTTAACACTCTGCTTTCACGTCCTTTGCAACCAAAATCGTTTTCACATCGCTATTTGGCAGGGGCT GGGATTTCACCTCTCCTGCAACATCAGTTTGAAGAATTAACAAGGCAAAAGTTAGACCAAGGTGTGAATTTGGGAGATAACAAAAGAAGGAAATTGGTGG TTATTGGTCAAGATTGTGTGGAGCCACTCCAGGCACTCCGAAGTTCTGGTCAGGAGGTAGTGCGCATGGACGTGAAAGAGACGGCAGAAAAACGTAGAGA CTTGGAGAATTTGAGGAGAAAAAGAAAGGGAGAGAAGAAACGTTTACGTGATCAGCGAAGGCAGCAGAAAAAAAGGTTGAAAGAAGTTGACGAGTAG
AA sequence Show only first row Show all	>Potri.010G063600.4 pacid=42798449 polypeptide=Potri.010G063600.4.p locus=Potri.010G063600 ID=Potri.010G063600.4.v4.1 annot-version=v4.1 MAAVTEAEPRVSSKQSNNKKGKRKRTHIDPEIDRLDSLPWNSSISQDDPFSVIAGSHELEGGFLSLEEIDEGDYGLEIPGLDKKVKKERKNKSKKQKDSD ADADGVEEEVEEEGINVEDKKKRKKRKKKKKAKESSRVDETTSVSNNKDDVEGESVDETEFYGWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG KDVVGAAETGSGKTLAFGLPILQRLLEEQDKASNMGDNVGEEAERFAPKGLLRALIITPTRELAIQVTDHFKEAAHGINIRVVSIVGGMSTEKQERLLKA RPEIIVGTPGRLWELMSGGEKHLVELHSLSFFVLDEADRMIENGHFRELQSIIDMLPMASGSIGGQSQSSENCQTLSNMQIKKRQTFVFSATIALSADFR KKLKRGSLKSKQSMADGLNSIEMLSERAGMRANAAIIDLTNASILANKLEESFIECKEEDKDACLYYILSVHGKGRTIVFCTSIAALRHTSALLRILGIN VWTLHAQMQQRARLKAIDRFRSNEHAILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARACTDGCSIALISSNDTSKFASLCKSFSKESFQR FPLEESYMQEVMRRLSLARQIDKITRKDSQEKAKKTWFERNAESIELMVENDDSEEERVNNHKQKRVTSMQLKNLQQELNTLLSRPLQPKSFSHRYLAGA GISPLLQHQFEELTRQKLDQGVNLGDNKRRKLVVIGQDCVEPLQALRSSGQEVVRMDVKETAEKRRDLENLRRKRKGEKKRLRDQRRQQKKRLKEVDE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16840			P-loop containing nucleoside t...		Potri.010G063600 [exp]	0	1
AT3G56990		EDA7	embryo sac development arrest ...		Potri.016G037400 [exp]	1.73	0.8392
AT1G69070			unknown protein		Potri.010G140100 [exp]	2.00	0.8308
AT1G03530		ATNAF1	nuclear assembly factor 1 (.1)		Potri.013G145300 [exp]	2.23	0.8522
AT1G31970		STRS1	STRESS RESPONSE SUPPRESSOR 1, ...		Potri.003G098800 [exp]	3.16	0.8430
AT1G50920			Nucleolar GTP-binding protein ...		Potri.009G054000 [exp]	3.46	0.7908
AT3G63400			Cyclophilin-like peptidyl-prol...		Potri.005G215800 [exp]	4.24	0.7789
AT3G55340		PHIP1	phragmoplastin interacting pro...		Potri.010G209701 [exp]	8.06	0.7958
AT2G34780		EMB1611, MEE22	EMBRYO DEFECTIVE 1611, materna...		Potri.011G161901 [exp]	9.38	0.7834
AT5G61330			rRNA processing protein-relate...		Potri.019G085100 [exp]	9.79	0.7260
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Potri.005G021400 [exp]	10.39	0.7548

Compare expression of checked genes

Potri.010G063600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.