Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33255 368 / 2e-130 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G043500 [exp] 47 / 4e-06 AT2G38740 297 / 1e-101 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004405 [exp] 375 / 2e-133 AT2G33255 356 / 7e-126 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10023707 [exp] 373 / 1e-132 AT2G33255 354 / 3e-125 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF13419 [poplar] [flax] HAD_2 Haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.010G063700.1 pacid=42800073 polypeptide=Potri.010G063700.1.p locus=Potri.010G063700 ID=Potri.010G063700.1.v4.1 annot-version=v4.1 ATGCCCTCCTTTCTCTTCAAATGCATCCCCTTCATACACCCAAAACCTCACCCCTTCCCCCTTTCTCACCTCACCGCCATGTCCATCAAAACCAAAACTC GCTTAAGAGGTGTCGTTTTCGACATGGACGGAACCTTAACCGTCCCCGTCATTGATTTCTCCTCCATGTACAAGGCCGTGCTAGGAGAAACCGAGTATCG CAGAATCAGACAAGAAAATCCATCTGGCATCGACATTTTGCATCTCATTGAGAGTTGGAGCCCTGATGAGCAGCGAAAGGCTAATGAGATCATCCTTGAT TTCGAGCGACTTGGTCGCGAGCGATTGCAAATCATGCCTGGTGCAGCTGAGCTTTGTGGCTTTCTTGATTCCAAGAAAATTAGAAGGGGATTGATTACGC GAAATGTCAAGGAAGCAGTAGATCTCTATCATCAACGCTTTGAGATTGTGTTTTCTCCAGCATTAAGCAGGGAGTTTCGTCCTTACAAGCCAGATCCTGC TCCTCTGCTGCATATCTGTTCAACTTGGGATGTCCAGCCCAATGAGGTCTTGATGGTTGGTGACAGCCTCAAAGATGATGTGGCCTGTGGAAAGCGAGCT GGAGCCTTCACATGCTTGCTTGATGAAAAAGGGAGGTACGGTTCTGCTGATTTTACCGAGTTGGATCTAGAACCAGACTTCAAGGTCGCTTCCCTAGCCG AAGTTCATTCACTATTGGAGACAAATTTTGATTTGATGCCTTGA
AA sequence Show only first row Show all	>Potri.010G063700.1 pacid=42800073 polypeptide=Potri.010G063700.1.p locus=Potri.010G063700 ID=Potri.010G063700.1.v4.1 annot-version=v4.1 MPSFLFKCIPFIHPKPHPFPLSHLTAMSIKTKTRLRGVVFDMDGTLTVPVIDFSSMYKAVLGETEYRRIRQENPSGIDILHLIESWSPDEQRKANEIILD FERLGRERLQIMPGAAELCGFLDSKKIRRGLITRNVKEAVDLYHQRFEIVFSPALSREFRPYKPDPAPLLHICSTWDVQPNEVLMVGDSLKDDVACGKRA GAFTCLLDEKGRYGSADFTELDLEPDFKVASLAEVHSLLETNFDLMP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33255			Haloacid dehalogenase-like hyd...		Potri.010G063700 [exp]	0	1
AT3G10940		LSF2	LIKE SEX4 2, dual specificity ...		Potri.019G048600 [exp]	1.41	0.8158
AT5G61340			unknown protein		Potri.004G102800 [exp]	2.64	0.7566
AT2G42520			P-loop containing nucleoside t...		Potri.003G217800 [exp]	3.46	0.7308
AT1G25260			Ribosomal protein L10 family p...		Potri.001G460100 [exp]	3.87	0.7650
AT1G05810		ARA, Ara-1, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.002G249500 [exp]	3.87	0.7686	RAB11.3
AT2G28430			unknown protein		Potri.004G210800 [exp]	5.29	0.7957
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Potri.013G020300 [exp]	6.32	0.7564	ATS9.2
AT2G21170		PDTPI, TIM	PLASTID ISOFORM TRIOSE PHOSPHA...		Potri.009G129500 [exp]	7.21	0.7663	TIM.2
AT3G56720			unknown protein		Potri.016G036000 [exp]	11.61	0.6971
AT4G17660			Protein kinase superfamily pro...		Potri.002G251300 [exp]	11.83	0.6812

Compare expression of checked genes

Potri.010G063700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.