Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04570 523 / 0 Major facilitator superfamily protein (.1) AT2G33280 466 / 2e-161 Major facilitator superfamily protein (.1) AT1G64890 297 / 2e-95 Major facilitator superfamily protein (.1) AT5G54860 125 / 1e-30 Major facilitator superfamily protein (.1) AT2G32040 119 / 2e-28 Major facilitator superfamily protein (.1) AT1G79710 101 / 1e-22 Major facilitator superfamily protein (.1) AT5G25050 100 / 2e-22 Major facilitator superfamily protein (.1) AT5G25040 94 / 3e-20 Major facilitator superfamily protein (.1.2.3) AT5G10820 88 / 3e-18 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G173600 [exp] 915 / 0 AT1G04570 502 / 6e-174 Major facilitator superfamily protein (.1) Potri.019G043000 [exp] 322 / 8e-105 AT1G64890 488 / 3e-171 Major facilitator superfamily protein (.1) Potri.013G076300 [exp] 311 / 1e-100 AT1G64890 493 / 3e-173 Major facilitator superfamily protein (.1) Potri.011G137300 [exp] 133 / 2e-33 AT5G54860 633 / 0.0 Major facilitator superfamily protein (.1) Potri.011G137400 [exp] 131 / 1e-32 AT5G54860 609 / 0.0 Major facilitator superfamily protein (.1) Potri.010G085900 [exp] 126 / 1e-30 AT2G32040 650 / 0.0 Major facilitator superfamily protein (.1) Potri.018G017100 [exp] 107 / 2e-24 AT5G25050 580 / 0.0 Major facilitator superfamily protein (.1) Potri.006G266000 [exp] 105 / 5e-24 AT5G25050 579 / 0.0 Major facilitator superfamily protein (.1) Potri.001G041600 [exp] 104 / 1e-23 AT1G79710 586 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023708 [exp] 389 / 5e-130 AT1G04570 451 / 3e-154 Major facilitator superfamily protein (.1) Lus10024977 [exp] 315 / 4e-102 AT1G64890 508 / 2e-179 Major facilitator superfamily protein (.1) Lus10024529 [exp] 223 / 2e-67 AT1G64890 355 / 2e-120 Major facilitator superfamily protein (.1) Lus10004407 [exp] 158 / 6e-46 AT2G33280 135 / 7e-39 Major facilitator superfamily protein (.1) Lus10004406 [exp] 137 / 4e-38 AT1G04570 108 / 2e-28 Major facilitator superfamily protein (.1) Lus10006106 [exp] 127 / 5e-31 AT2G32040 721 / 0.0 Major facilitator superfamily protein (.1) Lus10037809 [exp] 120 / 8e-29 AT5G54860 630 / 0.0 Major facilitator superfamily protein (.1) Lus10010565 [exp] 117 / 1e-27 AT2G32040 721 / 0.0 Major facilitator superfamily protein (.1) Lus10041620 [exp] 112 / 2e-26 AT1G79710 644 / 0.0 Major facilitator superfamily protein (.1) Lus10026890 [exp] 107 / 3e-24 AT5G10820 558 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.010G063800.1 pacid=42798846 polypeptide=Potri.010G063800.1.p locus=Potri.010G063800 ID=Potri.010G063800.1.v4.1 annot-version=v4.1 ATGTTTCCTTTATCAATTGCCAGTCAAAGTCCAGTTACCAAGTTGTCTCCAGATAACCCAAAAATACAAATATTCCCTTCTAATAAGTTATCTCGCTTGA AACCAGTTACATGCTCTTTGCACAAGAAGAACCCCAACACCATTAACAAACCTTCAAAGCCCAAGACTTATCCTTTTAGCTCCATTTTAATAGCCCCAGA TCAAGTTTCTCCTAAGAAAGGTAAGATAAGCAGGGGATATGAGGAAAGGAGAGGTTTTGGCCATTTGGGTAGCCAACAGATGCTGGCTTTGTGTGGGTTT GGGTATTGGATGCAGGGTTTTAGGTGCTTTCCTTGGCTTGCACTCAACTTCCATATGGCTCACAATCTCAACTTGCATTCATCAACGCTGCAGCTTTTGC AAAACTGTGGTAACTTTCCCATGGTGGCTAAGCCTCTTTATGGAATCCTCTCTGATGCTCTTTACACTGGAGGTGCTCATAGAATACCTTATATTCTAGT GGGAGTCTTTTTGCAGGTGCTAGCTTGGGGGCCACTAGCATTGATCCCAGTTGCACGGGAAGCCCTTGGAATCCTTATGGCATGCATACTTATCAGTAAT CTTGGTGCTTCTATCACAGAAATAGCTAAGGATGCCCTCGTTGCAGAATATGGCCAAAAAAACAGAATTGGGGGCCTCCAGTCTTATGCATTTATGGCTT TAGCTGTTGGTGGAATCCTAGGCAACTTGCTAGGTGGTTGTTTCTTACAGAAAACACCACCCAAAACCATGTTCCTTGTATTTTCAGTTCTGCTATCTCT TCAACTGGCATTTTCATCAACAGTGAGGGAGAAATCTCTTGGTTTATCAGAACCATCCGATCACAACCTTGTGAAGAAATCAATTTGGGAGAATATTAGG AAGCAGATAAGTGATCTTAAAACTGCATTAAACGATGACAACATCTCCTGCCCTCTCACTTGGATTGTAGCTTCTATTGCTACGGTCCCGGTTCTCTCAG GTTCCATCTTTTGCTATCAAACTCAGTGTCTACATTTTGATCCTTCAATTATTGGAATGTCACGCGCAATTGGCCAGTTGATACTTCTTTCCATGACTAT AATCTATGACCGTTTTTGGAAAGAAGTGCCTGTGAGGAAATTAGTTAGTGCAGTCCAGTTTTTATATGCCTGTTCTCTTCTTCTGGATCTTGTTCTAGTG AGACAGATCAATCTTAAATTGGGAATTCCCAATGAGGTGTTTGCCTGTTGTTTTTCGGGTTTAGCAGAAACACTTGCACAATTTAAGCTCCTTCCTTTTT CAATGCTATTGGCGAGTTTATGTCCACAGGGTTGTGAAGGATCTCTTACCTCTTTCCTGGCATCATCGTTGTGTTTATCATCAATTGTTAGTGGGTTCTT GGGCGTTGGGTTAGCTTCTCTGATTGGAATAACATCTGGTAATTACTCAAGCCTGCCAGTGGGAATTTTGATACAATTCCTTGCAGCATTATTGCCTTTA GGATGGATTCATCGTTTACCCATGTCCAAACCCATTGTTGAGAAGGAAAGAAGGCGAGGTATGAGTAAAAGAACACGAAAAAATAGAAGGGTTGGAAGAG TGGTGCTTGGCTCTATTTATGTTTACCACCGAGAAAGAGAATCTGATTCACAGAGATAA
AA sequence Show only first row Show all	>Potri.010G063800.1 pacid=42798846 polypeptide=Potri.010G063800.1.p locus=Potri.010G063800 ID=Potri.010G063800.1.v4.1 annot-version=v4.1 MFPLSIASQSPVTKLSPDNPKIQIFPSNKLSRLKPVTCSLHKKNPNTINKPSKPKTYPFSSILIAPDQVSPKKGKISRGYEERRGFGHLGSQQMLALCGF GYWMQGFRCFPWLALNFHMAHNLNLHSSTLQLLQNCGNFPMVAKPLYGILSDALYTGGAHRIPYILVGVFLQVLAWGPLALIPVAREALGILMACILISN LGASITEIAKDALVAEYGQKNRIGGLQSYAFMALAVGGILGNLLGGCFLQKTPPKTMFLVFSVLLSLQLAFSSTVREKSLGLSEPSDHNLVKKSIWENIR KQISDLKTALNDDNISCPLTWIVASIATVPVLSGSIFCYQTQCLHFDPSIIGMSRAIGQLILLSMTIIYDRFWKEVPVRKLVSAVQFLYACSLLLDLVLV RQINLKLGIPNEVFACCFSGLAETLAQFKLLPFSMLLASLCPQGCEGSLTSFLASSLCLSSIVSGFLGVGLASLIGITSGNYSSLPVGILIQFLAALLPL GWIHRLPMSKPIVEKERRRGMSKRTRKNRRVGRVVLGSIYVYHRERESDSQR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04570			Major facilitator superfamily ...		Potri.010G063800 [exp]	0	1
AT2G30280		RDM4, DMS4	DEFECTIVE IN MERISTEM SILENCIN...		Potri.019G126500 [exp]	2.23	0.9022
AT1G11710			Pentatricopeptide repeat (PPR)...		Potri.011G003700 [exp]	2.82	0.8690
AT5G56780		ATET2	ARABIDOPSIS EFFECTOR OF TRANSC...		Potri.006G150000 [exp]	3.46	0.8905
AT2G43770			Transducin/WD40 repeat-like su...		Potri.019G096900 [exp]	6.32	0.8852
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.005G061100 [exp]	7.34	0.8660
AT5G51940		NRPE6A, NRPD6A,...	RNA polymerase Rpb6 (.1)		Potri.012G136900 [exp]	7.41	0.8842
AT3G09890			Ankyrin repeat family protein ...		Potri.016G097900 [exp]	7.61	0.8226
AT5G23340			RNI-like superfamily protein (...		Potri.007G075600 [exp]	7.74	0.8755
AT3G26410		TRM11, AtTRM11	tRNA modification 11, methyltr...		Potri.001G207000 [exp]	11.40	0.8606
AT3G04980			DNAJ heat shock N-terminal dom...		Potri.013G029500 [exp]	12.40	0.8747

Compare expression of checked genes

Potri.010G063800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.