Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12770 385 / 7e-125 MEF22 mitochondrial editing factor 22 (.1) AT5G39350 360 / 1e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 360 / 5e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49142 352 / 2e-112 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 350 / 2e-111 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 354 / 3e-111 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G20230 350 / 1e-110 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 350 / 5e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 349 / 3e-109 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 344 / 7e-108 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G173500 [exp] 783 / 0 AT3G12770 261 / 4e-79 mitochondrial editing factor 22 (.1) Potri.001G466066 [exp] 372 / 1e-118 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G071800 [exp] 369 / 2e-118 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G108000 [exp] 367 / 2e-118 AT2G34400 640 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.012G041200 [exp] 369 / 5e-117 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G164900 [exp] 367 / 2e-116 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 365 / 2e-115 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 362 / 8e-115 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G005700 [exp] 356 / 7e-114 AT3G49142 912 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023710 [exp] 800 / 0 AT4G18750 385 / 3e-123 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014707 [exp] 380 / 3e-120 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 374 / 3e-119 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010320 [exp] 363 / 2e-117 AT2G34400 658 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10004081 [exp] 370 / 2e-116 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019735 [exp] 366 / 2e-116 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006123 [exp] 348 / 9e-111 AT4G14850 923 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001220 [exp] 353 / 1e-110 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008967 [exp] 351 / 5e-110 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008136 [exp] 340 / 2e-108 AT5G39350 639 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.010G063900.1 pacid=42797455 polypeptide=Potri.010G063900.1.p locus=Potri.010G063900 ID=Potri.010G063900.1.v4.1 annot-version=v4.1 ATGACCCTTTTCTCTGTATGGAAAGCAGTTAGCCTCAGAAGCTCCCGTAATTACTGTTATGCCACTCCGGTCTCTTCAGCTGAAAACCTCCTTGATTTAC TCCGTCTCTCACTCACCCACAAGTCTCTCAAACTCACTCAACAATGCCATGCTCGAATTCTCTCTCTTGGTTTCACTCAAAACCCCTTTTTGGCCACCAA ACTCATCTCTGCGTATGCTATATTCGGCGTCCCAGCTCTGTCCCGACTCGTTTTTGACTCGCTACATTTCAAGAGTGTTTACCTATGGAACTCGCTGATT AATGGGTTTGTAAAAAATCGTGCTTATAATGAAGCTTTTGGTTGGTTTTATCAAATGTGTTGCCGTGGTGTTTTGCTTGATGACTATACCCTTGCAACAA TGTCAAAAGTTTGCCACGAGATTGGTGACTTGAATGCAGGGAAATTGATTCATGGGAAAAGTTTAAAAACTGGGTTTGTTTTGGATGTTATAGTTGCCAA TTCTCTTATGTCAATGTATAGCAAATGTGGGGGATTTGGAGAATGTTTGAAACTATTTGATGAAATGCCTGAGAGAAATGTCGGTTCTTGGAATGTTATT CTATCGGGTTATGCGGATTCAGGGGATCGTAATTTTGATAAGGAGGTTTCAGGTTTTGTTAAAGACATGCAGATTGAGGGGTTAAAACCCGATGCATTTA CAGTTTCCAGTCTTTTGACTCTGTGTAATGGGCATATGGGGAAAAGGGACCATGGGAGGGAGCTTCATGGGTTTATAGTGAGAATTGAATTGGCCGTGGG TTCTGGTACAGAAGTTCATTTGGGATGCTGTTTGATTGATATGTACTCGAGGAGTAATAGAGTTGATGTGGGTAGAAGGGTTTTTGATAGAATGGAGTGT AGAAATGTTTATGCTTGGACAGCAATGATCAATGGTCATGTGCAGAATGGAGCTCTAGAAGAAGGGCTGGTTCTTTTTCATGAAATGCAGGTGAGGGATG GAGTAGAACCTAATAAGGTGTCGCTTGTGAGTGTTCTTCCTGCTTGTAGCGCGGTTGCTGGTTTAACTGGAGTGAAACAAATTCATGGATATGCCATTAG GAAGCAATTCAATAATGATGTTTCTTTATGCAATGCTTTGATTGACATGTATTCCAAGTGTGGGAGCTTGGATCATGCAAAACAAGTCTTTGAGTTTGGT TCTTTTCGTAGGGATCCGATATCTTGGAGTTCAATGATTTCTGGCTATGGATTGCACGGGAAGGGAGAGGAAGCTGTCTTTGTATACAACAAGATGCTTC AGCTTGGGAATAAACCAGACATGATAACAATAGTAGGGGTTCTTTCTGCTTGTAGCCGGGCTGGATTGGTAGATGAAGGCTTGTGCATCTACAAGTCTGC AATAAATAAATATAGAATTAAGCCAACTGTTGAGATTTGTGCTTGTGTTGTGGATATGTTAGGCCGATCAGGCCAGCTTGGCCAAGCTTTAGATTATATT AAAACTATGCCAATGGAACCTAGTCCAAGTGTTTGGGGGGCTGTTGTTAGTGCTTCCATAATCCATGGAAATTCTGAGATGCAGGATCTGGCTTATAGGT TCCTTGTTCAGTTAGAACCTGAAAACCCTTCGAATTATGTCTCGCTTTCAAATCTACATGCGTCTTCCAGGAGATGGGATGTAGTATCTGAGGTGAGAAC AATGATGAAAGATAGATGCTTAACAAAAACTCCTGGGTGCAGTTGGATAAGCATTAATAACACTACTCATTTTTTCTATGCCGCTGATAAACTGCATCCT TGTTCCAAGTCAATCTATGAACTGCTGGGTGGCCTCATATTACTGATGAAAGGACCTGCTGTTTCTCATGATTTTGAAAATTTTACATGGGTGTCTTGA
AA sequence Show only first row Show all	>Potri.010G063900.1 pacid=42797455 polypeptide=Potri.010G063900.1.p locus=Potri.010G063900 ID=Potri.010G063900.1.v4.1 annot-version=v4.1 MTLFSVWKAVSLRSSRNYCYATPVSSAENLLDLLRLSLTHKSLKLTQQCHARILSLGFTQNPFLATKLISAYAIFGVPALSRLVFDSLHFKSVYLWNSLI NGFVKNRAYNEAFGWFYQMCCRGVLLDDYTLATMSKVCHEIGDLNAGKLIHGKSLKTGFVLDVIVANSLMSMYSKCGGFGECLKLFDEMPERNVGSWNVI LSGYADSGDRNFDKEVSGFVKDMQIEGLKPDAFTVSSLLTLCNGHMGKRDHGRELHGFIVRIELAVGSGTEVHLGCCLIDMYSRSNRVDVGRRVFDRMEC RNVYAWTAMINGHVQNGALEEGLVLFHEMQVRDGVEPNKVSLVSVLPACSAVAGLTGVKQIHGYAIRKQFNNDVSLCNALIDMYSKCGSLDHAKQVFEFG SFRRDPISWSSMISGYGLHGKGEEAVFVYNKMLQLGNKPDMITIVGVLSACSRAGLVDEGLCIYKSAINKYRIKPTVEICACVVDMLGRSGQLGQALDYI KTMPMEPSPSVWGAVVSASIIHGNSEMQDLAYRFLVQLEPENPSNYVSLSNLHASSRRWDVVSEVRTMMKDRCLTKTPGCSWISINNTTHFFYAADKLHP CSKSIYELLGGLILLMKGPAVSHDFENFTWVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12770		MEF22	mitochondrial editing factor ...		Potri.010G063900 [exp]	0	1
AT1G56690			Pentatricopeptide repeat (PPR)...		Potri.005G006400 [exp]	1.41	0.9418
AT1G45332			Translation elongation factor ...		Potri.001G123600 [exp]	3.74	0.9158
AT3G18020			Pentatricopeptide repeat (PPR)...		Potri.015G039300 [exp]	4.24	0.9302
AT5G09840			Putative endonuclease or glyco...		Potri.001G307700 [exp]	4.24	0.9270
AT5G04050			RNA-directed DNA polymerase (r...		Potri.006G043650 [exp]	4.69	0.9121
AT3G50420			Pentatricopeptide repeat (PPR)...		Potri.005G131800 [exp]	5.00	0.9181
AT2G39620			Pentatricopeptide repeat (PPR)...		Potri.008G052200 [exp]	5.65	0.9157
AT4G19890			Pentatricopeptide repeat (PPR-...		Potri.015G121700 [exp]	6.00	0.9113
AT5G39350			Tetratricopeptide repeat (TPR)...		Potri.004G124400 [exp]	6.70	0.9140
AT5G15010			Tetratricopeptide repeat (TPR)...		Potri.013G053600 [exp]	6.92	0.8965

Compare expression of checked genes

Potri.010G063900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.