Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05210 248 / 2e-79 Surfeit locus protein 6 (.1.2) AT2G27750 103 / 3e-26 Surfeit locus protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G173300 [exp] 453 / 1e-160 AT5G05210 224 / 2e-70 Surfeit locus protein 6 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023712 [exp] 281 / 1e-92 AT5G05210 284 / 1e-93 Surfeit locus protein 6 (.1.2) Lus10014455 [exp] 129 / 1e-35 AT5G05210 176 / 5e-54 Surfeit locus protein 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04935 [poplar] [flax] SURF6 Surfeit locus protein 6 PF15459 [poplar] [flax] RRP14 60S ribosome biogenesis protein Rrp14
Representative CDS sequence Show only first row Show all	>Potri.010G064100.1 pacid=42797708 polypeptide=Potri.010G064100.1.p locus=Potri.010G064100 ID=Potri.010G064100.1.v4.1 annot-version=v4.1 ATGGGGAAGGAAAAGAAAATTCTTGCCGGTGAATCAGGTCCTGATGTTGATCTTAAGTCTCTCATTCATCGAAGTTCATTGTTTTTTGACAAGTTGATTG AACTCATCCCTGCTAAGTTCTATCTACCGACTGATGAGAAAGAGAAGCCATGGTTTCACGGCCTTAGTAAGGGTGCTAAAGCTTCAGCAAAGAAGGAAGC AAGGGAAAACATCAAGAAAGCAAGGAAAGATCGGCTTGACCCTGAGAAGTCTTCTACAACAACCCTTGATTTGTTAATGCAAAATTTGGAGAAAGAAAAA TCAAACAGTGAGAGTGATGGTGTTGAAGTGGAGATCAATCCAATGATGTCTGGTTTAGAAAACGATGACCAATCAGTCACGTATGAAGAACTCCGGCAAC GGCTTCGTCGTAAAATTGAAGAGCTCCGAGGTGATAGAAATTGCGGAAGTTCAGAAAAAGCTAAGTGGAGGAAGGAGAAGAGAGGGATTGAGCAAAAGAA ACGGAAGAGGGAATCTGGGTCTGGAGAAAAGAATCATGTCACGAGTACTTCATTGGAAAGGGTGGAGAAGGATGCAGAAGAAGCTACAAAGGAGCTCAAG TTTAGTCATGTTAAAATGGGGACTGAAGAAGAGCATGGGAAGAAGAAGAAGAGGAAGATTTCAAAGTTAAAGGAGCTTGAAAAGGCAAAAGAATTGGAAG AAGCAAAGAAAGATCCAGAGAAAGGGGGTGTTATCTCAAAGAAGCATTCATGGAAAGCAGCTACAAGTAGAGCTGCAGGAATTAAAGTTCATGATGATCC AAAGCTTCTGAAACAGAGTTTAAAGAAGGGTGAGAAGAGGCATCAAAAGAATGCTGAGAAGTGGAAGGAAAGGATTGAATCCCAGCATAAAATGAAAGCA GAAAAACAGCAAAAGAGATCAAAGAATATAGCTGGCAGAATTGAGCAGAAGAAGATGCGGAAGATTGAGAAGAGAGAGAAAAAGCTCATGCGGCCAGGGT TTGAAGGTCCTAAACAAGGTTATATCAATGAAGGTTCAACTTGA
AA sequence Show only first row Show all	>Potri.010G064100.1 pacid=42797708 polypeptide=Potri.010G064100.1.p locus=Potri.010G064100 ID=Potri.010G064100.1.v4.1 annot-version=v4.1 MGKEKKILAGESGPDVDLKSLIHRSSLFFDKLIELIPAKFYLPTDEKEKPWFHGLSKGAKASAKKEARENIKKARKDRLDPEKSSTTTLDLLMQNLEKEK SNSESDGVEVEINPMMSGLENDDQSVTYEELRQRLRRKIEELRGDRNCGSSEKAKWRKEKRGIEQKKRKRESGSGEKNHVTSTSLERVEKDAEEATKELK FSHVKMGTEEEHGKKKKRKISKLKELEKAKELEEAKKDPEKGGVISKKHSWKAATSRAAGIKVHDDPKLLKQSLKKGEKRHQKNAEKWKERIESQHKMKA EKQQKRSKNIAGRIEQKKMRKIEKREKKLMRPGFEGPKQGYINEGST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05210			Surfeit locus protein 6 (.1.2)		Potri.010G064100 [exp]	0	1
AT5G62440			Protein of unknown function (D...		Potri.005G033100 [exp]	2.00	0.8283
AT5G62440			Protein of unknown function (D...		Potri.013G022500 [exp]	2.23	0.8543
AT1G06530		PMD2	peroxisomal and mitochondrial ...		Potri.005G201400 [exp]	3.46	0.8205
AT3G07930			DNA glycosylase superfamily pr...		Potri.014G189400 [exp]	6.70	0.7909
AT1G50920			Nucleolar GTP-binding protein ...		Potri.009G054000 [exp]	9.21	0.7688
AT1G61730	GeBP		DNA-binding storekeeper protei...		Potri.007G119800 [exp]	9.38	0.8136
AT5G50310			Galactose oxidase/kelch repeat...		Potri.015G090100 [exp]	11.61	0.7704
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Potri.016G041200 [exp]	12.00	0.7915	Pt-NAP57.1
AT5G53800			unknown protein		Potri.011G121000 [exp]	12.48	0.8031
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Potri.015G130900 [exp]	13.41	0.7876

Compare expression of checked genes

Potri.010G064100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.