Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04560 215 / 6e-72 AWPM-19-like family protein (.1) AT5G46530 82 / 3e-20 AWPM-19-like family protein (.1) AT1G29520 76 / 2e-17 AWPM-19-like family protein (.1) AT5G18970 64 / 4e-13 AWPM-19-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G113000 [exp] 145 / 1e-44 AT1G04560 155 / 2e-48 AWPM-19-like family protein (.1) Potri.011G077800 [exp] 83 / 3e-20 AT5G46530 164 / 2e-52 AWPM-19-like family protein (.1) Potri.001G354500 [exp] 81 / 3e-19 AT1G29520 194 / 3e-64 AWPM-19-like family protein (.1) Potri.008G200300 [exp] 49 / 2e-07 AT5G18970 186 / 4e-61 AWPM-19-like family protein (.1) Potri.008G200000 [exp] 49 / 2e-07 AT5G18970 216 / 1e-72 AWPM-19-like family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014456 [exp] 235 / 7e-80 AT1G04560 254 / 2e-87 AWPM-19-like family protein (.1) Lus10023713 [exp] 234 / 1e-79 AT1G04560 254 / 2e-87 AWPM-19-like family protein (.1) Lus10017578 [exp] 111 / 3e-31 AT1G04560 148 / 1e-45 AWPM-19-like family protein (.1) Lus10015255 [exp] 89 / 2e-22 AT5G46530 240 / 2e-82 AWPM-19-like family protein (.1) Lus10025374 [exp] 87 / 5e-22 AT5G46530 241 / 4e-83 AWPM-19-like family protein (.1) Lus10011973 [exp] 87 / 8e-22 AT5G46530 240 / 2e-82 AWPM-19-like family protein (.1) Lus10004587 [exp] 86 / 2e-21 AT5G46530 240 / 2e-82 AWPM-19-like family protein (.1) Lus10033541 [exp] 61 / 5e-12 AT1G04560 91 / 2e-23 AWPM-19-like family protein (.1) Lus10001116 [exp] 49 / 3e-07 AT5G18970 216 / 1e-72 AWPM-19-like family protein (.1) Lus10041238 [exp] 44 / 1e-05 AT5G18970 225 / 2e-76 AWPM-19-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05512 [poplar] [flax] AWPM-19 AWPM-19-like family
Representative CDS sequence Show only first row Show all	>Potri.010G064200.2 pacid=42799567 polypeptide=Potri.010G064200.2.p locus=Potri.010G064200 ID=Potri.010G064200.2.v4.1 annot-version=v4.1 ATGGCGCAGACGGTTGGGAGAAACATAGCAGCTCCATTGCTGTTTCTTAACCTGCTCATGTATGCTATTGCCCTGGGCTTTGCTAGTTGGTGCACTAATA GGTACATCAATGGCCAAACCAGCCACCCAAGCTTTGGAGGGAATGGAGCAACAGGATTCTTCCTGACCTTTGCAATATTAGCTTGTGTTGTTGGCATGGT ATCCAAATTCGTTGGTGGCGCCCACATCAGGGCATGGAGGGGTGATAGTCTAGCTGCAGCAGGATCAGCTTCGCTGGTTGCCTGGGCCATCACTGCCCTA GCCTTTGGGTTTGCGTGCAAGGAGATAAACGTAGGAGGCTACAGAGGTTGGAGGCTGCGGGCAGTAGAGGCATTTATAATCATTTTGACATTTACCCAGC TTCTGTACGTCTTGTTGCTTCACGCCGGGATGTTTAGCAGCAAGTATGGACCAGGATACCGTGACACTGACTATGGCGTCGGTGCCGGTACTAGTGAACC TGTACACAAGGGCGGTGCTGTTCCTGTAGCTGGCGCTAGGGTTTAA
AA sequence Show only first row Show all	>Potri.010G064200.2 pacid=42799567 polypeptide=Potri.010G064200.2.p locus=Potri.010G064200 ID=Potri.010G064200.2.v4.1 annot-version=v4.1 MAQTVGRNIAAPLLFLNLLMYAIALGFASWCTNRYINGQTSHPSFGGNGATGFFLTFAILACVVGMVSKFVGGAHIRAWRGDSLAAAGSASLVAWAITAL AFGFACKEINVGGYRGWRLRAVEAFIIILTFTQLLYVLLLHAGMFSSKYGPGYRDTDYGVGAGTSEPVHKGGAVPVAGARV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04560			AWPM-19-like family protein (....		Potri.010G064200 [exp]	0	1
AT1G07900	AS2	LBD1	LOB domain-containing protein ...		Potri.008G043900 [exp]	3.16	0.8594
AT5G26720			unknown protein		Potri.013G000200 [exp]	5.47	0.7485
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Potri.001G084000 [exp]	8.48	0.8399
AT5G52300		LTI65, RD29B	RESPONSIVE TO DESSICATION 29B,...		Potri.012G141300 [exp]	8.71	0.8297
AT5G52390			PAR1 protein (.1)		Potri.012G141800 [exp]	8.77	0.7904
AT5G24080			Protein kinase superfamily pro...		Potri.012G034901 [exp]	15.00	0.7989
AT3G14440		SIS7, ATNCED3, ...	SALT TOLERANT 1, SUGAR INSENSI...		Potri.011G112400 [exp]	16.85	0.8412
AT3G18950			Transducin/WD40 repeat-like su...		Potri.009G109500 [exp]	17.14	0.8050
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Potri.009G081400 [exp]	18.00	0.7866
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Potri.012G002700 [exp]	19.36	0.7712

Compare expression of checked genes

Potri.010G064200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.