Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10580 906 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT5G54520 199 / 1e-57 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 114 / 4e-28 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 108 / 6e-26 Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 103 / 6e-24 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 102 / 2e-23 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT4G15900 102 / 8e-23 PRL1 pleiotropic regulatory locus 1 (.1) AT3G16650 89 / 2e-18 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08560 84 / 7e-17 transducin family protein / WD-40 repeat family protein (.1.2) AT1G61210 84 / 1e-16 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G172800 [exp] 1032 / 0 AT1G10580 874 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G410500 [exp] 188 / 1e-53 AT5G54520 510 / 5e-180 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 110 / 1e-26 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 110 / 1e-26 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G306500 [exp] 108 / 8e-26 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 102 / 1e-23 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 99 / 2e-22 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G087200 [exp] 97 / 3e-21 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G012800 [exp] 96 / 7e-21 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030869 [exp] 919 / 0 AT1G10580 939 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10030620 [exp] 910 / 0 AT1G10580 926 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10014805 [exp] 160 / 5e-45 AT5G54520 403 / 2e-140 Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 111 / 9e-27 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 110 / 3e-26 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 109 / 5e-26 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 107 / 2e-25 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10012230 [exp] 97 / 2e-21 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10006511 [exp] 96 / 1e-20 AT4G15900 753 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10002090 [exp] 93 / 1e-20 AT5G64730 525 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.010G064600.1 pacid=42798061 polypeptide=Potri.010G064600.1.p locus=Potri.010G064600 ID=Potri.010G064600.1.v4.1 annot-version=v4.1 ATGGATCTTCTCCAAAACTACCAAAACGACGGAGAATTAGACCAAAACCCTAATTCCTCTCCGGATTCATCCCCTCCACGTCTCCTCCCTTCCAAATCCG CCGCTCCCAAAGTCGACGACACCATGCTAGCCCTAACAGTAGCCAATCAAATGCTCTCTAAACCTATCGACCCCGTCCAGCACGTCGTCGCTTTCAACCC TACCTACGACCAGCTGTGGGCTCCGGTTTTAGGCCCCGCCCATCCCTACGCCAAGGACGGCATTGCCCAGGGCATGCGCAACCACAAGCTCGGCTTCGTC GAGGACGCCGCCATTGATTCCTTCGTCTTCGACGAGCAGTACAACACTTTCCACAAGTATGGCTACGCGGCTGACCCCTCTGCTTCTGCAGGTAATAATT ATATTGGTGATTTGGATGTTTTAGAAAAAAATAATGGGATTTCTGTTTATAATATTCCGCAACATGAACAAAAGAAGCGAAAGATTGAGAAGAAAACGGA AGCTGTTGAGGATGACGATGATGGAATGGACAAGGAAGAGGTTGAGAATCCGGCTACGGATGCGTGGTTGATGAAGAATAGGAAGAGCCCTTGGGCTGGT AAGAAGGAGGGATTACAAACTGAGTTGACTGAAGAGCAGAAAAAATATGCGGAAGAGCACGCGAGGAAGAAGGAGGAGAAAGCTGGTGGTGAAAAAGGTG AGCTTGTTGCTGATAAGACTACTTTTCATGGTAAAGAAGAGAGGGATTATCAAGGGAGGTCGTGGATTGCGCCACCTAAAGATGCTAAAGCTAGTAATGA TCATTGTTATATACCCAAGAGATTGGTGCATACATGGAGTGGCCATACTAAAGGAGTTTCTGCTATAAGGTTTTTCCCTAAACATGGCCATTTGATACTT TCTGCGGGTATGGATACGAAGGTGAAGATATGGGATGTGTTTAATTCGGGAAAGTGTATGAGAACTTATATGGGTCATTCTAAGGCTGTCAGGGATATTT CATTTTGTAACGATGGCTCCAAGTTTTTAACTGCTGGTTATGATAAGAATATTAAGTACTGGGACACAGAGACGGGCCAGGTTATCTCTTCGTTTTCGAC TGGGAAGATTCCATATGTTGTTAAGCTCAATCCTGATGATGATAAGCAGAATATATTGTTGGCGGGTATGAGTGATAAGAAGATTGTGCAGTGGGATATG AACACAGGGCAGATTACTCAGGAGTATGACCAGCATTTGGGGGCAGTGAATACCATCACATTTGTGGATAATAACAGGAGATTTGTTACTTCAAGTGATG ATAAATCACTCCGTGTATGGGAATTTGGGATCCCTGTTGTTATTAAGTATATTAGTGAGCCTCACATGCATTCTATGCCATCGATCTCTCTTCATCCCAA TATGAATTGGCTTGCTGCGCAGAGTTTGGATAACCAGATTCTTATTTATAGTACTAGGGAAAGATTCCAGTTGAATAAGAAGAAGAGGTTCGCTGGTCAC ATTGTGGCTGGTTATGCTTGTCAAGTCAATTTCTCACCAGATGGAAGATTTGTTATGTCAGGAGATGGTGAGGGTAAATGCTGGTTTTGGGACTGGAAGA GTTGTAAAGTTTTCAGGACCCTCAAATGTCACGAGGGAGTCTGCATTGGGGCTGAGTGGCATCCGCTGGAGCAAAGTAAAGTGGCCACTTGTGGCTGGGA TGGATTGATTAAATACTGGGACTAG
AA sequence Show only first row Show all	>Potri.010G064600.1 pacid=42798061 polypeptide=Potri.010G064600.1.p locus=Potri.010G064600 ID=Potri.010G064600.1.v4.1 annot-version=v4.1 MDLLQNYQNDGELDQNPNSSPDSSPPRLLPSKSAAPKVDDTMLALTVANQMLSKPIDPVQHVVAFNPTYDQLWAPVLGPAHPYAKDGIAQGMRNHKLGFV EDAAIDSFVFDEQYNTFHKYGYAADPSASAGNNYIGDLDVLEKNNGISVYNIPQHEQKKRKIEKKTEAVEDDDDGMDKEEVENPATDAWLMKNRKSPWAG KKEGLQTELTEEQKKYAEEHARKKEEKAGGEKGELVADKTTFHGKEERDYQGRSWIAPPKDAKASNDHCYIPKRLVHTWSGHTKGVSAIRFFPKHGHLIL SAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGSKFLTAGYDKNIKYWDTETGQVISSFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM NTGQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNMNWLAAQSLDNQILIYSTRERFQLNKKKRFAGH IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGAEWHPLEQSKVATCGWDGLIKYWD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10580			Transducin/WD40 repeat-like su...		Potri.010G064600 [exp]	0	1
AT4G27640			ARM repeat superfamily protein...		Potri.008G085800 [exp]	22.75	0.7509
AT3G26050			TPX2 (targeting protein for Xk...		Potri.010G053200 [exp]	23.79	0.7761
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.009G103100 [exp]	31.46	0.7565
AT5G10200			ARM-repeat/Tetratricopeptide r...		Potri.007G092100 [exp]	34.35	0.7645
AT4G17950	AT-hook		AT hook motif DNA-binding fami...		Potri.001G143500 [exp]	48.83	0.7287
AT2G30933			Carbohydrate-binding X8 domain...		Potri.005G003500 [exp]	55.44	0.7231
AT5G49160		MET2, DMT1, DMT...	METHYLTRANSFERASE I, METHYLTRA...		Potri.004G134000 [exp]	64.34	0.7508	DMT901,Pt-MET1.2
AT3G60190		ADL1E, ADL4, AD...	ENHANCED DISEASE RESISTANCE 3,...		Potri.001G147500 [exp]	66.40	0.7474
AT2G41620			Nucleoporin interacting compon...		Potri.015G026200 [exp]	67.24	0.7479
AT3G58610			ketol-acid reductoisomerase (....		Potri.014G055100 [exp]	73.32	0.7313

Compare expression of checked genes

Potri.010G064600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.