Plant FIBer expression Database

Potri.010G064700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G48520 754 / 0 GATB GLU-ADT subunit B (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G172700
[exp]
890 / 0 AT1G48520 842 / 0.0 GLU-ADT subunit B (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012905
[exp]
776 / 0 AT1G48520 868 / 0.0 GLU-ADT subunit B (.1.2.3)
Lus10030559
[exp]
766 / 0 AT1G48520 850 / 0.0 GLU-ADT subunit B (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0279 GatB_YqeY PF02637 GatB_Yqey GatB domain
CL0286 GCS PF02934 GatB_N GatB/GatE catalytic domain
Representative CDS sequence
>Potri.010G064700.2 pacid=42797661 polypeptide=Potri.010G064702.1.p locus=Potri.010G064700 ID=Potri.010G064700.2.v4.1 annot-version=v4.1
GCCTTCTTTAGAAGAAAGAATGGTGCCTTGTACTGCACGATGAAAAGCAGCAGCGTCACACAAACTCAAACAGCCACACAAGAAAAACAGCAGAACCCAC
AAATCAAAGTTTCTACCCAGACGCAGACCAAAACTATTGATAAACTTATAAAAGACTATGAGGCAATCATTGGTATAGAAACCCATGTCCAGCTATCCAC
TTTAACCAAAGCCTTTTGTGGATGTCCATACAACTATGGAGCTCAACCATACACAAGTATCTGCCCTGTTTGCATGGGGTTGCCAGGTGCTTTACCAGTT
TTGAACTCCAAAGTCATTGAGTTTGCTGTGAAATTAGGTCTTGCGCTTAATTGCAAGCTGTCTTTAAACTCAAAGTTTGATAGGAAACAGTATTTTTACC
CTGACCTTCCAAAGGGTTACCAAATATCTCAGTTTGATATACCAATTGCAACCAATGGTTATGTTGATTTGGATCTTCCTGTGGAATTTGGTGGTGGGCA
TAGGAGGTTTGGCATTACAAGAGTTCGTATGGAAGAGGATGCTGGGAAGCTGCTTCATTCAGGAAATGGGACTGCAGAGTATGCAGCTGAAATACAGAGG
GTGGTCCGCTACTTGGGAATTAGTAATGGTAATATGCAGGAAGGCTCACATCGCTGTGATTCAGAGTTCGGGACAAAGGTTGAGATAAAGAATTTAAATT
CATTTTCGTCAGTTAATAGGGCCATTGATTTTGAGATATCAAGACAAGTGTTTCTGCACAGTCAAGGGCAAGGCAGTTCAATTGTACAAGAAACTCGGCT
TTGGGAAGAAGGCGCTCAGAAAACAATTACAATGAGGAAAAAGGAGGGGCTTTCCGATTATCGATATTTTCCAGAACCAGACCTTCCAGAAGTTATTGTA
AAAAAAGAGTACATTGATAGTATTCAAAATTCTTTGCCAGAACTTCCAGAAATGAAGCGCCGGAGGTATGAGAGCATGGGCCTAAGCATGCAGGATGTTC
TTTTCCTTGCAAATGACATAAATGTCGCTGAATTTTTTGATGCAACAATTGCCAAGGGTGCTGATGTGAAGCTGGCTACCAACTGGATAATGGGGGATAT
TGCTGCCTATATGAAAAATGAGAAAGTATCTATAAATGATATTAAACTTAACCCCCAGGAGTTGGCTGAGCTTATAGCTTCTATTAAAGTTGGGACCATC
AGTGGGAAGATTGGGAAAGAGATACTGTCTGAGCTCATAGCCAAAGGTGGAACTGTTAAGGGACTGATAGAAGAAAAAAATTTGGTTCAGATAGTAGATC
CTGCTCATATTGAGAAGATGGTAGATAAAGTGCTTTCAGAGAACCCAAAGCAGTTGGAACAATACCGAGCCGGAAAAACTAAGATACAAGGTTTTTTAGC
TGGCCAGGTGATGAAATTATCAAAAGGTAAGGCCAATCCAGGACTTCTGAACAAGATCCTTCAACAGAAACTGAATGCCACAAGCTGA
AA sequence
>Potri.010G064700.2 pacid=42797661 polypeptide=Potri.010G064702.1.p locus=Potri.010G064700 ID=Potri.010G064700.2.v4.1 annot-version=v4.1
AFFRRKNGALYCTMKSSSVTQTQTATQEKQQNPQIKVSTQTQTKTIDKLIKDYEAIIGIETHVQLSTLTKAFCGCPYNYGAQPYTSICPVCMGLPGALPV
LNSKVIEFAVKLGLALNCKLSLNSKFDRKQYFYPDLPKGYQISQFDIPIATNGYVDLDLPVEFGGGHRRFGITRVRMEEDAGKLLHSGNGTAEYAAEIQR
VVRYLGISNGNMQEGSHRCDSEFGTKVEIKNLNSFSSVNRAIDFEISRQVFLHSQGQGSSIVQETRLWEEGAQKTITMRKKEGLSDYRYFPEPDLPEVIV
KKEYIDSIQNSLPELPEMKRRRYESMGLSMQDVLFLANDINVAEFFDATIAKGADVKLATNWIMGDIAAYMKNEKVSINDIKLNPQELAELIASIKVGTI
SGKIGKEILSELIAKGGTVKGLIEEKNLVQIVDPAHIEKMVDKVLSENPKQLEQYRAGKTKIQGFLAGQVMKLSKGKANPGLLNKILQQKLNATS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G48520 GATB GLU-ADT subunit B (.1.2.3) Potri.010G064700
[exp]
0 1
AT4G03090 sequence-specific DNA binding;... Potri.014G135700
[exp]
2.82 0.8344
AT3G60500 G3, CER7 ECERIFERUM 7, 3'-5'-exoribonuc... Potri.001G253200
[exp]
5.65 0.7963
AT4G00335 RHB1A RING-H2 finger B1A (.1.2.3) Potri.002G161500
[exp]
15.09 0.7778
AT4G39680 SAP domain-containing protein ... Potri.005G080500
[exp]
15.29 0.8089
AT3G19840 ATPRP40C pre-mRNA-processing protein 40... Potri.010G170400
[exp]
18.33 0.8141
AT5G15270 RNA-binding KH domain-containi... Potri.010G167100
[exp]
19.36 0.7600
AT5G20930 TSL TOUSLED, Protein kinase superf... Potri.009G155400
[exp]
21.63 0.7769
AT1G55540 EMB1011 Nuclear pore complex protein (... Potri.003G223400
[exp]
23.30 0.8145
AT1G72390 unknown protein Potri.001G165800
[exp]
28.46 0.8115
AT4G25540 ATMSH3, MSH3 homolog of DNA mismatch repair... Potri.015G142900
[exp]
29.46 0.7974

Potri.010G064700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.