Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24315 249 / 8e-82 ATSEC20 Sec20 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014460 [exp] 291 / 4e-98 AT3G24315 393 / 8e-139 Sec20 family protein (.1) Lus10023717 [exp] 289 / 1e-97 AT3G24315 393 / 8e-139 Sec20 family protein (.1) Lus10014461 [exp] 99 / 3e-25 AT3G24315 169 / 4e-53 Sec20 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0147 [poplar] [flax] Traffic PF03908 [poplar] [flax] Sec20 Sec20
Representative CDS sequence Show only first row Show all	>Potri.010G064900.1 pacid=42799234 polypeptide=Potri.010G064900.1.p locus=Potri.010G064900 ID=Potri.010G064900.1.v4.1 annot-version=v4.1 ATGGATGAGGTAGTGGAGGCAGTGGAGAAGGCGAAGAAAGAATGGGAAGAGACGTATTCTAAAGCACAACAACACATGAAAGCAATTCAAGATTACGACG CCATATCTTCTTCTTCTTCTTCTTCTGTTTCTCTTCCGAGATTGAATGGCTTGGCACAAGATTGTTTAGCTTTGCTTCAATCCTTGCAGTTCCAGCTCGA TCTCCTTGCTCCTCAATTGCCTACCGATGATCAACTCAAATCCGCCCTCCGATTACTTGATTCCTGGAAACAGCTTTACCATGATTTGCGGGCGAGTTTG AGAAATGCTAATCTGCAAGCCAAGGCTAACATGAGAAAAGCTGCTCAACAAGAGAGAGAGCTTCTTCTTGGTGGTGGAGAAGAGTCCACTATTCGCAGGC GAAATTTGCAGACAAAGGCTGGGATGACATCCGCTGCAGAAAGCATCACGGAGAGCCTTCGCAGAACTCGTCAGCTAATGGTTCAGGAGGTTGAAAGAAG TACTGGCACTCTCATGACTTTTGAGGAATCAACAACAGTATTAAGGAAGGCTGAAACAGAATATAAGGGTCATCGCTCATTGTTATCGCGAACTCGCAAT CTTCTCTCTACGATGCAACGTCAGGATGTTCTTGACAGGGTGATACTGGCAGTAGGATTTTTCTTGTTTTCATGTGCTGTTCTTTATGTTGTTTCCAAGC GCATTGGCGTACTTGCATTGCAGAGAAAGGTTACTGCTGCCTTAAAAGCCGGTATGGCCGGAAAAGGAGCCATCAAAGCCAGAGCTGTTGAAGATGCTAT ACCCAGAGTTATTGAAGATGGTATTGATGTTGCTCAGGTCCTGGACAATGCAGTTCCCAAGGTGGAAGTACCTGTAGAACAAGCCATGCATGATGAACTT TAA
AA sequence Show only first row Show all	>Potri.010G064900.1 pacid=42799234 polypeptide=Potri.010G064900.1.p locus=Potri.010G064900 ID=Potri.010G064900.1.v4.1 annot-version=v4.1 MDEVVEAVEKAKKEWEETYSKAQQHMKAIQDYDAISSSSSSSVSLPRLNGLAQDCLALLQSLQFQLDLLAPQLPTDDQLKSALRLLDSWKQLYHDLRASL RNANLQAKANMRKAAQQERELLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERSTGTLMTFEESTTVLRKAETEYKGHRSLLSRTRN LLSTMQRQDVLDRVILAVGFFLFSCAVLYVVSKRIGVLALQRKVTAALKAGMAGKGAIKARAVEDAIPRVIEDGIDVAQVLDNAVPKVEVPVEQAMHDEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24315		ATSEC20	Sec20 family protein (.1)		Potri.010G064900 [exp]	0	1
AT1G09580			emp24/gp25L/p24 family/GOLD fa...		Potri.003G019300 [exp]	1.73	0.8032
AT3G07580			unknown protein		Potri.014G172600 [exp]	3.46	0.7180
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Potri.014G137100 [exp]	3.87	0.7291
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Potri.003G133600 [exp]	4.58	0.7111
AT5G17210			Protein of unknown function (D...		Potri.019G048300 [exp]	4.58	0.7359
AT3G08890			Protein of unknown function, D...		Potri.016G125300 [exp]	6.00	0.7020
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Potri.010G227700 [exp]	8.66	0.6514
AT2G16030			S-adenosyl-L-methionine-depend...		Potri.019G125300 [exp]	9.32	0.6244
AT3G24160		PMP	putative type 1 membrane prote...		Potri.003G178400 [exp]	16.91	0.7460	Pt-PMP.2
AT3G59350			Protein kinase superfamily pro...		Potri.017G036300 [exp]	29.39	0.5993

Compare expression of checked genes

Potri.010G064900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.