Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CHM.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24320 1670 / 0 CHM1, ATMSH1, CHM, MSH1 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) AT4G02070 122 / 1e-27 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT5G54090 106 / 4e-23 DNA mismatch repair protein MutS, type 2 (.1) AT3G24495 100 / 3e-21 ATMSH7, MSH7, MSH6-2 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) AT4G25540 94 / 3e-19 ATMSH3, MSH3 homolog of DNA mismatch repair protein MSH3 (.1) AT3G18524 86 / 1e-16 ATMSH2, MSH2 MUTS homolog 2 (.1) AT4G17380 82 / 2e-15 MSH4, ATMSH4 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) AT1G65070 77 / 6e-14 DNA mismatch repair protein MutS, type 2 (.1.2) AT3G20475 68 / 3e-11 ATMSH5 MUTS-homologue 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G121701 [exp] 112 / 1e-24 AT4G02070 1402 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.006G156314 [exp] 100 / 4e-21 AT3G24495 1348 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.006G159200 [exp] 100 / 4e-21 AT3G24495 1372 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.012G005000 [exp] 96 / 9e-20 AT5G54090 847 / 0.0 DNA mismatch repair protein MutS, type 2 (.1) Potri.015G142900 [exp] 95 / 2e-19 AT4G25540 1313 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Potri.004G041900 [exp] 88 / 3e-17 AT1G65070 924 / 0.0 DNA mismatch repair protein MutS, type 2 (.1.2) Potri.012G060000 [exp] 84 / 3e-16 AT3G18524 1438 / 0.0 MUTS homolog 2 (.1) Potri.001G156200 [exp] 80 / 5e-15 AT4G17380 1226 / 0.0 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Potri.011G089500 [exp] 67 / 4e-11 AT3G20475 1264 / 0.0 MUTS-homologue 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023718 [exp] 1769 / 0 AT3G24320 1594 / 0.0 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) Lus10014462 [exp] 1680 / 0 AT3G24320 1506 / 0.0 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) Lus10010010 [exp] 110 / 5e-24 AT4G02070 1559 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10005743 [exp] 100 / 7e-21 AT4G25540 1305 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Lus10017724 [exp] 98 / 2e-20 AT3G24495 1267 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10027452 [exp] 95 / 2e-20 AT4G25540 447 / 1e-148 homolog of DNA mismatch repair protein MSH3 (.1) Lus10032917 [exp] 94 / 4e-19 AT5G54090 808 / 0.0 DNA mismatch repair protein MutS, type 2 (.1) Lus10018187 [exp] 91 / 3e-18 AT1G65070 899 / 0.0 DNA mismatch repair protein MutS, type 2 (.1.2) Lus10025647 [exp] 91 / 4e-18 AT1G65070 892 / 0.0 DNA mismatch repair protein MutS, type 2 (.1.2) Lus10015589 [exp] 89 / 9e-18 AT5G54090 791 / 0.0 DNA mismatch repair protein MutS, type 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00488 [poplar] [flax] MutS_V MutS domain V CL0418 [poplar] [flax] GIY-YIG PF01541 [poplar] [flax] GIY-YIG GIY-YIG catalytic domain
Representative CDS sequence Show only first row Show all	>Potri.010G065000.1 pacid=42799951 polypeptide=Potri.010G065000.1.p locus=Potri.010G065000 ID=Potri.010G065000.1.v4.1 annot-version=v4.1 ATGTACTGGTTAGCAACTAGAAATGCCGTCGTTTCACTTCCCAAGTGGCGCTCCTTCGCTCTCCTCCTCCGTGCTCCTTTCAAATGCAGTTCACTTGGCC TGTCGCCACCGCCTCTTTACAGCAGGATCGGACAGGCTCAACCTATTTATTGCTTTAAAAATCCGAAAGGAACCGCAAGAAATAGCAAGAAATCTAAAGC ATCCAATAGTGTTCTCGACGATAAGGATCTTTCACACATTATATGGTGGAAGGAGAATTTGCAGCGGTGTAAGAAGCCTTCCACTGTTAATCTGGTTAAA AGGCTTATGTATTCCAATTTGCTCGGCTTGGATGCTAGCTTGAAAAATGGGAGTTTGAAGGAAGGAAATCTCAACTGGGAAATATTGCAATTCAAGTCAA AGTTTCCACGCGAGGTTTTGCTCTGCAGGGTTGGGGATTTCTATGAAGCCATCGGAATAGATGCTTGTATTCTTGTTGAATATGCTGGTTTAAATCCTTT TGGTGGGCTGCGATCTGATAGCGTTCCTAGAGCTGGCTGCCCTGTTGTGAATCTTCGGCAAACTTTAGATGACTTGACACGTAATGGGTATTCAGTGTGC ATAGTGGAGGAGGTTCAGGGTCCAACACAAGCTCGTTCACGTAAAGGTCGTTTCATTTCTGGGCATGCACGTCCAGGGAGTCCATACGTTTTTGGACTTG TTGGGGTTGATCATGATCTTGAATTTCCAGAACCAATGCCCGTGGTTGGGATATCTCAATCAGCAAGGGGTTATTGCATGATCTCAGTCTTAGAGACCAT GAAAACATATTCATTAGAGGATGGTCTGACTGAAGAGGCTTTGGTTACCAAGCTTCGTACTTGTCAGTACCACCATCTATTCCTTCATTCATCCTTGAGA CACAATTCCTCAGGAACTTGTCGTTGGGGAGAGTATGGTCGGGGTGGCTTGTTGTGGGGAGAATGTAACGGCAGATATTTTGAGTGGTTTGAAGGAGATC CTGTCACTGAGCTTTTATTCAAGGTCAGGGAGCTTTATGGTCTTGATGATAAAGTTGGGTTCAGAAATGCTTATGTGTCTTCAGAAAACAGGCCCAGACC ATTACACCTTGGAACGGCAACACAAATTGGTGCCATACCAACAGAAGGAATTCCTTGTTTATTAAAGGTGTTACTTCCATCAAATTGCACAGGTCTACCA GAACTGTATGTCAGAGATATGCTTCTCAACCCTCCTGCTTATGAAATTGCATCAACAATTCAAGCAACATGCAAACTTATGAGCAATATAACATGCTCAA TTCCGGAGTTCACTTGTGTGTCCTCTGCAAAGCTTGTGAAGCTACTTGAACAGAAGGAAGCCAATCATATTGAGTTTTGTAGAATAAAAAATGTACTTGA TGAAATATTGTTCATGTATAGAAACTCTGAGCTCAATGAAATACTGAAATCATTGATGGATCCTGCTTGGATGGCAACTGGTTTGAAAATCGACTTTGAG ACATTAGTTAATGAATGTGAATGGGCTTCAGGCAGAATTTCTGAAATGATTTCCCTAGATGGGGAAAGTGATCAAAAGATAAGTTCTTGTCCTGTTGTAC CAAGTGAATTTTTTGAGGATATGGAGTCTTCATGGAAAGGTCGTGTGAAGAGGGTCCATATAGAGGAGGAATTTTCAGAAGTGGAAAAGGCTGCACAGGC CTTATCTTTAGCAGTCACTGAAGATTTCATTCCTATCATTTCAAGAATAAAAGCAACCACATCCCCCTTTGGTGGTCCAAAGGGAGAAATATTGTATGCT CGAGAGCATGAAGCTGTTTGGTTCAAGGGAAAACGGTTTGCACCAGCAGTATGGGCTGGTACCCCCGGGGAAGAACAAATTAAACAGCTTAAACCTGCTG TAGATTCTAAAGGTAGAAAAGTTGGCGAGGAATGGTTCACTACAATTAAGTTGGAGGATGCTTTAACGAGGTATCATGATGCAGGCGAGAAAGCAAAAGC AAAGGTTTTGGAATTGTTTAGGGGGCTTTCTGCTGAGTTACAAACAAAAGTCAATATCCTTGTCTTTGCATCAATGGTGCTTGTCATTGCAAAGGCATTA TTTGCTCATGTGAGTGAAGGGAGACGGAGGAAATGGGTTTTTCCCACTCTTACTGGGTTCAATGATTCAAAGGGCGTGAAATCCTCGGATGGTGCTAACA GGATGAAATTTGTTGGTCTGTCTCCATATTGGTTTAATGCTGCAGAAGGCAGTGCTGTACAGAATACAGTGGATATGCAGTCCTTGTTTCTTTTGACAGG ACCAAACGGAGGTGGTAAATCTAGTTTGCTTCGATCAATCTGTGCATCTGCATTACTTGGAATATGTGGACTTATGGTTCCTGCAGAATCAGCTTTGATT CCTAACTTCGATTCTATAATGCTTCACATGAAATCTTACGATAGTCCTGCTGATGGAAAAAGTTCATTTCAGGTGGAAATGTCAGAAATCCGGTCCCTTG TAACTGGAGCTTCATCAAGAAGCCTTGTGCTCGTAGATGAAATATGTCGAGGAACAGAAACAGCGAAGGGTGCTTGTATTGCTGGAAGCATTGTTGAAAC TCTTGATAGAATTGGTTGTCTTGGAATTGTGTCCACGCATTTGCATGGCATATTTGATTTGCCACTTGATACCAGCAATACCGTGTATAAAGCAATGGGA ACAGAGTATGTGGATGGACGAACAAAACCAACTTGGAGGTTGATAGATGGGATTTGCAGAGAAAGTCTTGCTTTTGAAACAGCCAAGAAGGAAGGAATCC CTGAAAGTATAATCCAAAGAGCTGAAGACCTGTATTTTTCAGCTTATGCTAAAGGAGTTATTTCAGGAAAGACAGTCAACAGTGTCGGACAGTTTTCTTC TGATAGGATTGTTAATGATTCTGATGAAGCCCATTTATCGAGTGGAACCACAGCTTCTCTTCATCCTAGTACCCATTCAACAAAGGCAGTGGATACTGTG GAGAAGAAAGATATTGAAAATGCTATTACCATGATATGCCAGAAGAAGCTGATTGAGCTCTACAAACAGAAAAACACATCAGAAGTTGTATCATTCCACT GTGTTGCCATTGGTGCCAGGGAACAGCCACCTCCATCAACAATCAGTGCTTCATGTGTCTATGTGATGTTGAGACCGGACAAGAAGCTATATGTTGGAGT GACGGATGATCTTGAAAGCCGAATCCGTTCACATCGTTCAAAGGAAGGAATGGACAATGCTGCTTTTCTTTATTTCATAGTCCCTGGAAAGAGTATTGCT TGCTTACTGGAAACACTTCTCATCAACCAACTTCCTATTAAAGGATTCAAACTGACAAATGTGTCTGATGGTAAGCATCGGAATTTCGGCACAACCAATC TCTCTCTGGAAAGTGTGACTGTTCATTAA
AA sequence Show only first row Show all	>Potri.010G065000.1 pacid=42799951 polypeptide=Potri.010G065000.1.p locus=Potri.010G065000 ID=Potri.010G065000.1.v4.1 annot-version=v4.1 MYWLATRNAVVSLPKWRSFALLLRAPFKCSSLGLSPPPLYSRIGQAQPIYCFKNPKGTARNSKKSKASNSVLDDKDLSHIIWWKENLQRCKKPSTVNLVK RLMYSNLLGLDASLKNGSLKEGNLNWEILQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRSDSVPRAGCPVVNLRQTLDDLTRNGYSVC IVEEVQGPTQARSRKGRFISGHARPGSPYVFGLVGVDHDLEFPEPMPVVGISQSARGYCMISVLETMKTYSLEDGLTEEALVTKLRTCQYHHLFLHSSLR HNSSGTCRWGEYGRGGLLWGECNGRYFEWFEGDPVTELLFKVRELYGLDDKVGFRNAYVSSENRPRPLHLGTATQIGAIPTEGIPCLLKVLLPSNCTGLP ELYVRDMLLNPPAYEIASTIQATCKLMSNITCSIPEFTCVSSAKLVKLLEQKEANHIEFCRIKNVLDEILFMYRNSELNEILKSLMDPAWMATGLKIDFE TLVNECEWASGRISEMISLDGESDQKISSCPVVPSEFFEDMESSWKGRVKRVHIEEEFSEVEKAAQALSLAVTEDFIPIISRIKATTSPFGGPKGEILYA REHEAVWFKGKRFAPAVWAGTPGEEQIKQLKPAVDSKGRKVGEEWFTTIKLEDALTRYHDAGEKAKAKVLELFRGLSAELQTKVNILVFASMVLVIAKAL FAHVSEGRRRKWVFPTLTGFNDSKGVKSSDGANRMKFVGLSPYWFNAAEGSAVQNTVDMQSLFLLTGPNGGGKSSLLRSICASALLGICGLMVPAESALI PNFDSIMLHMKSYDSPADGKSSFQVEMSEIRSLVTGASSRSLVLVDEICRGTETAKGACIAGSIVETLDRIGCLGIVSTHLHGIFDLPLDTSNTVYKAMG TEYVDGRTKPTWRLIDGICRESLAFETAKKEGIPESIIQRAEDLYFSAYAKGVISGKTVNSVGQFSSDRIVNDSDEAHLSSGTTASLHPSTHSTKAVDTV EKKDIENAITMICQKKLIELYKQKNTSEVVSFHCVAIGAREQPPPSTISASCVYVMLRPDKKLYVGVTDDLESRIRSHRSKEGMDNAAFLYFIVPGKSIA CLLETLLINQLPIKGFKLTNVSDGKHRNFGTTNLSLESVTVH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24320		CHM1, ATMSH1, C...	CHLOROPLAST MUTATOR, MUTL prot...		Potri.010G065000 [exp]	0	1	CHM.1
AT2G47940		EMB3117, DEGP2	EMBRYO DEFECTIVE 3117, DEGP pr...		Potri.002G207200 [exp]	3.16	0.8357
AT2G39580			unknown protein		Potri.010G208200 [exp]	4.69	0.8165
AT3G04940		ATCYSD1	cysteine synthase D1 (.1)		Potri.005G048066 [exp]	4.79	0.7590
AT4G27220			NB-ARC domain-containing disea...		Potri.001G426660 [exp]	7.74	0.7909
AT5G63890		HISN8, ATHDH	HISTIDINE BIOSYNTHESIS 8, hist...		Potri.011G163400 [exp]	9.16	0.7679
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Potri.016G084500 [exp]	12.00	0.7686
AT3G42170			BED zinc finger ;hAT family di...		Potri.016G026066 [exp]	12.44	0.7890
AT3G62310			RNA helicase family protein (....		Potri.014G117900 [exp]	15.32	0.7368
AT5G15270			RNA-binding KH domain-containi...		Potri.008G088600 [exp]	15.58	0.7798
AT3G16730		HEB2	hypersensitive to excess boron...		Potri.008G219100 [exp]	20.34	0.7032

Compare expression of checked genes

Potri.010G065000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.