Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13430 850 / 0 ATLEUC1, IIL1 isopropyl malate isomerase large subunit 1 (.1) AT4G26970 84 / 6e-17 ACO2 aconitase 2 (.1) AT4G35830 84 / 8e-17 ACO1 aconitase 1 (.1.2) AT2G05710 82 / 3e-16 ACO3 aconitase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G172500 [exp] 719 / 0 AT4G13430 644 / 0.0 isopropyl malate isomerase large subunit 1 (.1) Potri.014G153400 [exp] 87 / 1e-17 AT2G05710 1695 / 0.0 aconitase 3 (.1) Potri.002G229200 [exp] 83 / 2e-16 AT2G05710 1674 / 0.0 aconitase 3 (.1) Potri.007G060900 [exp] 82 / 3e-16 AT4G35830 1658 / 0.0 aconitase 1 (.1.2) Potri.005G108100 [exp] 82 / 5e-16 AT4G35830 1668 / 0.0 aconitase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043129 [exp] 897 / 0 AT4G13430 852 / 0.0 isopropyl malate isomerase large subunit 1 (.1) Lus10032620 [exp] 820 / 0 AT4G13430 772 / 0.0 isopropyl malate isomerase large subunit 1 (.1) Lus10014463 [exp] 732 / 0 AT4G13430 702 / 0.0 isopropyl malate isomerase large subunit 1 (.1) Lus10027165 [exp] 88 / 4e-18 AT2G05710 1706 / 0.0 aconitase 3 (.1) Lus10031561 [exp] 86 / 3e-17 AT2G05710 1674 / 0.0 aconitase 3 (.1) Lus10039678 [exp] 85 / 5e-17 AT2G05710 1704 / 0.0 aconitase 3 (.1) Lus10021533 [exp] 84 / 7e-17 AT2G05710 1523 / 0.0 aconitase 3 (.1) Lus10015116 [exp] 84 / 8e-17 AT2G05710 1707 / 0.0 aconitase 3 (.1) Lus10041858 [exp] 84 / 1e-16 AT4G35830 1695 / 0.0 aconitase 1 (.1.2) Lus10040070 [exp] 83 / 2e-16 AT2G05710 1620 / 0.0 aconitase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00330 [poplar] [flax] Aconitase Aconitase family (aconitate hydratase)
Representative CDS sequence Show only first row Show all	>Potri.010G065100.1 pacid=42797948 polypeptide=Potri.010G065100.1.p locus=Potri.010G065100 ID=Potri.010G065100.1.v4.1 annot-version=v4.1 ATGGCTTCCTCTACCATTTCTCCAAACTCCACATTCTTCATCACCAAAAAGGATCCGGGTTTGTCGGCCTTTTCTTCATCATCACCATCACCCTTTTCGA TCCCCAAATGCAAGAAATCAATTTCAAAAAAAATAGTATCGGTCATGGCTCCTCAGCAATCAGAGCGCAGGCCTGCCACAACTGGCTCGGTCAAGACTGC GTTGACAATGACAGAGAAAATCTTTGCTAGAGCCTCTGAGAAGCCCCAGTTGATCCCAGGTGAGAATGTTTGGGTCAACGTTGATATCTTGATGACCCAT GATGTTTGTGGCCCTGGTTCTATTGGGATCTTCAAGAAAGAGTTTGGACAGGATGCTAAGGTTTGGGATCGTGAAAAGGTTGTCATTATACCAGATCATT ATATATTCACTAAAGACGAACGTGCAAATCGCAATGTGGATATATTGAGAGATTTCTGCAATGAACAAAATATAAAGTACTTCTATGATATCAAGGATCT TGGTAACTTCAAGGCTAACCCCGACTACAAAGGTGTATGCCATGTTGCACTTGCCCAAGAAGGTCATTGCAGGCCTGGAGAGGTCCTGTTAGGAACAGAC TCACACACATGTACTGCTGGAGCATTTGGCCAATTTGCAACTGGAATTGGCAACACTGATGCTGGTTTTGTATTAGGCACTGGGAAGCTCCTGCTCAAGG TGCCCCCAACTCTGAGATTTGTAATGGATGGTGAAATGCCTGATTATTTGCAAGCGAAGGACTTGATTTTGCAAATTATTGGTGAAATATCTGTTGCTGG TGCCACATATAAATCGATGGAGTTTGTTGGCTCAACTGTTGAAAGTTTAACTATGGAAGAGCGGATGACATTATGCAACATGGTTGTTGAAGCTGGGGGA AAGAATGGTGTTGTCCCTGCTGATAGCACTACATTCAAGTACCTTGAGGATAAAACGACTCTGCCATATGAACCAGTTTATAGTGATGCGCAAGCAAGAT TTCTTTCAGAGTACAGATTCGATATCTCAAAATTGGAGCCATTGGTTGCAAAGCCTCATTCTCCTGACAATCGTGCTTTAGCAAGAGAATGCAGAGATGT CAAAATTGACAGAGTATATATCGGATCTTGTACTGGTGGAAAAACAGAGGATTTTATGGCTGTAGCCAAAGTCTTTCTAGCTTCTGGTAAAAAGGTCAAA GTTCCCACATTCCTTGTCCCTGCTACCCAAAAGGTTTGGATGGACGTATACACTCTCCCAGTACCAGGATCTGGTGGCAAGACTTGCGCCCAGATTTTTG AAGAAGCTGGGTGTGACACGCCTGCAAGTCCTAGCTGTGGTGCCTGTTTGGGAGGCCCTAAAGACACTCATGCTCGCATGAATGAGCCTATGGTCTGCGT CTCGACAACAAATAGGAACTTCCCTGGCCGTATGGGACACAAGGAAGGCCAGATATATCTTGCCTCTCCTTACACTGCCGCAGCATCTGCTTTGACTGGT TTTGTCACTGATCCAAGGGAGTTCTTGCAGTAG
AA sequence Show only first row Show all	>Potri.010G065100.1 pacid=42797948 polypeptide=Potri.010G065100.1.p locus=Potri.010G065100 ID=Potri.010G065100.1.v4.1 annot-version=v4.1 MASSTISPNSTFFITKKDPGLSAFSSSSPSPFSIPKCKKSISKKIVSVMAPQQSERRPATTGSVKTALTMTEKIFARASEKPQLIPGENVWVNVDILMTH DVCGPGSIGIFKKEFGQDAKVWDREKVVIIPDHYIFTKDERANRNVDILRDFCNEQNIKYFYDIKDLGNFKANPDYKGVCHVALAQEGHCRPGEVLLGTD SHTCTAGAFGQFATGIGNTDAGFVLGTGKLLLKVPPTLRFVMDGEMPDYLQAKDLILQIIGEISVAGATYKSMEFVGSTVESLTMEERMTLCNMVVEAGG KNGVVPADSTTFKYLEDKTTLPYEPVYSDAQARFLSEYRFDISKLEPLVAKPHSPDNRALARECRDVKIDRVYIGSCTGGKTEDFMAVAKVFLASGKKVK VPTFLVPATQKVWMDVYTLPVPGSGGKTCAQIFEEAGCDTPASPSCGACLGGPKDTHARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTG FVTDPREFLQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13430		ATLEUC1, IIL1	isopropyl malate isomerase lar...		Potri.010G065100 [exp]	0	1
AT5G15802			unknown protein		Potri.017G099600 [exp]	6.48	0.9533
AT5G17560			BolA-like family protein (.1)		Potri.013G074100 [exp]	6.78	0.9346
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Potri.007G117200 [exp]	8.48	0.9508	Pt-ZOG1.9
AT4G13220			unknown protein		Potri.002G251800 [exp]	8.88	0.9574
AT1G67280			Glyoxalase/Bleomycin resistanc...		Potri.006G160600 [exp]	11.83	0.9543
AT1G22850			SNARE associated Golgi protein...		Potri.019G071900 [exp]	13.49	0.9571
AT4G34620		SSR16	small subunit ribosomal protei...		Potri.013G128200 [exp]	14.49	0.9533
AT2G24020			Uncharacterised BCR, YbaB fami...		Potri.018G105600 [exp]	15.87	0.9390
AT2G23670		YCF37	homolog of Synechocystis YCF37...		Potri.007G034300 [exp]	16.70	0.9566
AT5G02120		PDE335, OHP	PIGMENT DEFECTIVE 335, one hel...		Potri.006G088200 [exp]	19.05	0.9489

Compare expression of checked genes

Potri.010G065100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.