Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33310 243 / 4e-80 AUX_IAA IAA13 auxin-induced protein 13 (.1.2.3) AT1G04550 234 / 8e-77 AUX_IAA BDL, IAA12 indole-3-acetic acid inducible 12, BODENLOS, AUX/IAA transcriptional regulator family protein (.1.2) AT4G28640 184 / 4e-57 AUX_IAA IAA11 indole-3-acetic acid inducible 11 (.1.2.3) AT1G04100 148 / 8e-43 AUX_IAA IAA10 indoleacetic acid-induced protein 10 (.1) AT3G23050 143 / 4e-41 AUX_IAA AXR2, IAA7 AUXIN RESISTANT 2, indole-3-acetic acid 7 (.1.2) AT4G14550 142 / 4e-41 AUX_IAA SLR, IAA14 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) AT4G29080 135 / 1e-37 AUX_IAA IAA27, PAP2 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) AT3G04730 134 / 1e-37 AUX_IAA IAA16 indoleacetic acid-induced protein 16 (.1) AT3G16500 132 / 1e-36 AUX_IAA IAA26, PAP1 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) AT1G04250 130 / 1e-36 AUX_IAA IAA17, AXR3 indole-3-acetic acid inducible 17, AUXIN RESISTANT 3, AUX/IAA transcriptional regulator family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G172400 [exp] 455 / 9e-163 AT2G33310 246 / 4e-81 auxin-induced protein 13 (.1.2.3) Potri.002G256600 [exp] 224 / 7e-72 AT4G28640 191 / 6e-60 indole-3-acetic acid inducible 11 (.1.2.3) Potri.005G053900 [exp] 144 / 2e-41 AT3G04730 317 / 3e-110 indoleacetic acid-induced protein 16 (.1) Potri.002G044900 [exp] 142 / 4e-41 AT4G14550 286 / 1e-98 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.013G041400 [exp] 142 / 8e-41 AT3G04730 306 / 6e-106 indoleacetic acid-induced protein 16 (.1) Potri.005G218300 [exp] 141 / 2e-40 AT4G14550 292 / 7e-101 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.002G108000 [exp] 142 / 1e-39 AT5G65670 355 / 4e-122 indole-3-acetic acid inducible 9 (.1.2) Potri.008G161200 [exp] 137 / 5e-39 AT4G14550 343 / 1e-120 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.003G051300 [exp] 135 / 2e-37 AT4G29080 298 / 3e-100 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023719 [exp] 305 / 3e-103 AT2G33310 223 / 4e-72 auxin-induced protein 13 (.1.2.3) Lus10014464 [exp] 300 / 4e-101 AT2G33310 231 / 4e-75 auxin-induced protein 13 (.1.2.3) Lus10022868 [exp] 174 / 1e-52 AT4G28640 198 / 1e-62 indole-3-acetic acid inducible 11 (.1.2.3) Lus10039414 [exp] 149 / 3e-43 AT4G14550 305 / 1e-105 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Lus10024958 [exp] 149 / 2e-42 AT4G28640 162 / 3e-48 indole-3-acetic acid inducible 11 (.1.2.3) Lus10034962 [exp] 146 / 1e-41 AT4G29080 289 / 4e-97 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Lus10015907 [exp] 135 / 7e-38 AT3G04730 309 / 5e-107 indoleacetic acid-induced protein 16 (.1) Lus10012984 [exp] 136 / 1e-37 AT4G29080 280 / 8e-94 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Lus10028222 [exp] 135 / 1e-37 AT5G65670 322 / 3e-110 indole-3-acetic acid inducible 9 (.1.2) Lus10042929 [exp] 136 / 2e-37 AT5G65670 356 / 3e-122 indole-3-acetic acid inducible 9 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF02309 [poplar] [flax] AUX_IAA AUX/IAA family
Representative CDS sequence Show only first row Show all	>Potri.010G065200.1 pacid=42799843 polypeptide=Potri.010G065200.1.p locus=Potri.010G065200 ID=Potri.010G065200.1.v4.1 annot-version=v4.1 ATGATGGAAGGCTGTCTTGGTTTACTTGGTGGCGGTGGTTCTTCTGGAGCCTCCACGAATAAGTCCACACTGTCAAAAGTGGAGGTGATCGAGGCTGAGG CAAGTTCATATCCAGTGGAAGCTGAGCTAGAGTTGGGTCTGGGGCTGAGTCTTGGTAGTGGTGGAGGAGGAAAGGGTAAGGCAAATGCATGGGGTGAGTG TGGTAGAATCTTGACTGCCAAGGACTTTCCTTCGGTGGTCTCTCAGCCTCAAAGGCCCAACAACAACAACTCTATGCCTTCTACCTGTGTTGTTGGTGCT GTTTCTGGGACTAAGAGAGCTGCTGACTCTGTCTCCCATGAGGGTGGATCCCCTACTGCTGGCAGTCAGGTTGTGGGGTGGCCTCCTATAAGGGCTTATC GGATGAATAGCTTGGTGAGCCAAGCAAAGGCTGCGAGAGCTGAAGAAGAAAAGGGAATTGGTGAGAAGGATAAATCTAAGGAGAATTTGAAGAAGAAAAT CTGTAATGGTAACAAGACCAATGCTACTGGTAATGAAAAGGGGCATCTTGGATTTGTCAAGGTGAATATGGATGGAGTTCCAATTGGAAGGAAGGTAGAT TTGAATGCCCATGCTTGTTATGAAACATTAGCCCAGGCATTAGAGGAAATGTTCTTCAGGTCCACCACCACTATCAATTCCATCGGTGGACAGAAGCCAC TATCAAAGTTCTCTAAGCTATTGGATGGGTCGTCTGAGTTTGTGCTCACTTATGAAGATAAAGAGGGAGACTGGATGCTCGTGGGAGATGTTCCTTGGGG GATGTTCCTCACCTCTGTAAAAAGGCTTCGAATCATGAGGACCTCAGAGGCCAATGGACTTGCTCCAAGACTCCAGGATAGGAATGAGAAACAAAGAAGC AAGCCTGTTTAG
AA sequence Show only first row Show all	>Potri.010G065200.1 pacid=42799843 polypeptide=Potri.010G065200.1.p locus=Potri.010G065200 ID=Potri.010G065200.1.v4.1 annot-version=v4.1 MMEGCLGLLGGGGSSGASTNKSTLSKVEVIEAEASSYPVEAELELGLGLSLGSGGGGKGKANAWGECGRILTAKDFPSVVSQPQRPNNNNSMPSTCVVGA VSGTKRAADSVSHEGGSPTAGSQVVGWPPIRAYRMNSLVSQAKAARAEEEKGIGEKDKSKENLKKKICNGNKTNATGNEKGHLGFVKVNMDGVPIGRKVD LNAHACYETLAQALEEMFFRSTTTINSIGGQKPLSKFSKLLDGSSEFVLTYEDKEGDWMLVGDVPWGMFLTSVKRLRIMRTSEANGLAPRLQDRNEKQRS KPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33310	AUX_IAA	IAA13	auxin-induced protein 13 (.1.2...		Potri.010G065200 [exp]	0	1
AT1G34210		ATSERK2, SERK2	somatic embryogenesis receptor...		Potri.013G117200 [exp]	5.47	0.8159	Pt-SERK2.2
AT3G12150			unknown protein		Potri.016G049700 [exp]	7.87	0.8218
AT1G13700		PGL1	6-phosphogluconolactonase 1 (....		Potri.010G157200 [exp]	20.44	0.7579
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Potri.010G157600 [exp]	22.04	0.8172
AT3G02700			NC domain-containing protein-r...		Potri.004G078700 [exp]	35.51	0.7359
AT3G01300			Protein kinase superfamily pro...		Potri.018G127300 [exp]	36.16	0.7825
AT3G58800			unknown protein		Potri.002G168500 [exp]	45.36	0.7955
AT5G42350			Galactose oxidase/kelch repeat...		Potri.002G007700 [exp]	57.46	0.7805
AT3G28917	ZF_HD	MIF2	mini zinc finger 2 (.1)		Potri.004G126600 [exp]	67.08	0.7543
AT2G44290			Bifunctional inhibitor/lipid-t...		Potri.001G008500 [exp]	75.77	0.7008

Compare expression of checked genes

Potri.010G065200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.