Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43960 310 / 4e-101 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT5G60980 159 / 1e-43 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT3G25150 148 / 2e-39 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT5G48650 134 / 2e-34 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1) AT1G13730 119 / 3e-29 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1) AT2G03640 100 / 1e-22 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain AT1G69250 91 / 2e-19 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT3G07250 82 / 2e-16 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (.1) AT3G55540 50 / 3e-06 nuclear transport factor 2 (NTF2) family protein (.1) AT4G31580 44 / 0.0001 SRZ22, RSZP22, SRZ-22, RSZ22, At-RSZ22 RS-containing zinc finger protein 22, serine/arginine-rich 22 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G257000 [exp] 385 / 2e-130 AT5G43960 402 / 3e-137 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.014G192900 [exp] 350 / 1e-116 AT5G43960 392 / 3e-133 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.015G058700 [exp] 165 / 3e-45 AT5G60980 382 / 9e-129 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.017G094600 [exp] 160 / 5e-44 AT5G60980 286 / 6e-92 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.008G096700 [exp] 143 / 1e-37 AT2G03640 219 / 3e-66 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Potri.010G157800 [exp] 132 / 1e-33 AT1G13730 219 / 4e-66 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1) Potri.002G246600 [exp] 115 / 1e-27 AT3G25150 374 / 8e-125 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.003G170800 [exp] 44 / 2e-05 AT1G27970 230 / 1e-79 nuclear transport factor 2B (.1.2) Potri.001G057500 [exp] 44 / 3e-05 AT1G27970 228 / 4e-79 nuclear transport factor 2B (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023722 [exp] 439 / 3e-150 AT5G43960 266 / 2e-83 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10022873 [exp] 331 / 4e-109 AT5G43960 377 / 1e-127 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10014469 [exp] 249 / 5e-78 AT5G43960 156 / 4e-43 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10003144 [exp] 165 / 2e-45 AT3G25150 385 / 2e-129 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10022765 [exp] 159 / 3e-43 AT3G25150 408 / 1e-138 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10025906 [exp] 146 / 9e-38 AT3G25150 363 / 4e-118 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10024953 [exp] 135 / 8e-37 AT5G43960 159 / 8e-47 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10026668 [exp] 127 / 7e-32 AT2G03640 255 / 5e-80 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Lus10036918 [exp] 108 / 3e-25 AT2G03640 250 / 4e-78 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Lus10037066 [exp] 108 / 5e-25 AT2G03640 248 / 2e-77 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0051 [poplar] [flax] NTF2 PF02136 [poplar] [flax] NTF2 Nuclear transport factor 2 (NTF2) domain
Representative CDS sequence Show only first row Show all	>Potri.010G065500.2 pacid=42799243 polypeptide=Potri.010G065500.2.p locus=Potri.010G065500 ID=Potri.010G065500.2.v4.1 annot-version=v4.1 ATGTCGTCGTCGGTGCCCTATCACATTCCAGTCAGTGCTGCTCAGGTAGGGACTTACTTTGTGGCACAGTACTATCAAGTATTACAGCAACAACCCGAGT TTGTCCACCAGTTCTACAGCGATGCCAGTACTATGCTTCGTATTGATGGCTCTATCAGAGAATCCGCTGCTACAATGCTCCAAATCCATGCTCTCATTAT GTCACTCAAGTATACTGGAATTGAGATCAGGACAGCGCATGCCCTGGATTCTTGGAATGGAGGTGTTCTTGTGATGGTTTCTGGTTACGTGCAAGTAAAA GGCTTTGATAATAAGAGGAAATTTGTAGAGACATTTTTTCTTGCCCCTCAGGAGAAAGGCTATTTTGTTCTTAATGATGTTTTTCACTTCATTGACGAAC AACCAACTCACCATCATCCAGCAGTCTTCTTAGCCCAGATCCATCTTGATTCCAAACTCAATTCTCCTAATGCCATTCCTGAGCCAGTTCCTACCTATTT AATGGGTGGAGAAACCCAGGCTAGGGAATTTGTGGCCCCTGCTGACGCCAAAGAAAATGGTCCTGTTGACAGCTATACTTTCCCAGAGAAAAGGTTGCAG CAAGCATCTGAGTCTGAAAACATTCTGGAGGAAAACTCTGTGGAAAAGCCAAATGGCTCACTTAAAAATACAGCAAGCAATGCACAAGACCGCCAGCCTG CCTCTGTTGAGGAACCTGCTAGAGAGCCCCAAAAACACACATATGCTTCTATTTTACGTGTTGCTAAGGGGCAATCTGCCACATCAGTGACTCCCCAGCC TTCTGTCAATAAGAATGTACCTCCTGCTTCAGAATGGAATCACACTTCACAGGCCCCTGTTCAACAATCAACTGTGATGTCAGATTCATTTGAAAGGCCA GAGGCAGAGACAGCTGAGGAAATTCATGAAGATGAAATAAGGTCTGTATATGTGAGAAACTTGCTGCCTACCTTATCAGAAGCTGAGATTGAAGAGGAAT TCAAGAATTTTGGTGAAATCGTGCCTGATGGAGTAGTCATTCGAAGTCGCAAGGATGTTGGTGTATGTTATGCATTTGTTGAATTTGAAGATATGGCTGG TGTTCATAATGCAGTCAAGGCGGGTAGTGCAATTGTTGGTGGACGGCAAGTTTACATTGAAGAACGAAGACCAAACAGCAACATCCCATTTCGAGCAGGA AGAGGAAGGGGTAGAGGCAGGGGTGGCTACCCAACAGATGCTCCAAGGGGTGGTTTTAGCTCTCGGAGTTCTGGTAGAGGAGGTAGCTATGATGGAGGTG ACAGGGACTACAACAGACCAAAAGGAAATGGTTATTACAGGCCTGGTCCACGCCAAGATAGAGGGTTCTCAGGTCACCAAGTATCAAGAAATGGACAAGA TCAAACAGATTAG
AA sequence Show only first row Show all	>Potri.010G065500.2 pacid=42799243 polypeptide=Potri.010G065500.2.p locus=Potri.010G065500 ID=Potri.010G065500.2.v4.1 annot-version=v4.1 MSSSVPYHIPVSAAQVGTYFVAQYYQVLQQQPEFVHQFYSDASTMLRIDGSIRESAATMLQIHALIMSLKYTGIEIRTAHALDSWNGGVLVMVSGYVQVK GFDNKRKFVETFFLAPQEKGYFVLNDVFHFIDEQPTHHHPAVFLAQIHLDSKLNSPNAIPEPVPTYLMGGETQAREFVAPADAKENGPVDSYTFPEKRLQ QASESENILEENSVEKPNGSLKNTASNAQDRQPASVEEPAREPQKHTYASILRVAKGQSATSVTPQPSVNKNVPPASEWNHTSQAPVQQSTVMSDSFERP EAETAEEIHEDEIRSVYVRNLLPTLSEAEIEEEFKNFGEIVPDGVVIRSRKDVGVCYAFVEFEDMAGVHNAVKAGSAIVGGRQVYIEERRPNSNIPFRAG RGRGRGRGGYPTDAPRGGFSSRSSGRGGSYDGGDRDYNRPKGNGYYRPGPRQDRGFSGHQVSRNGQDQTD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43960			Nuclear transport factor 2 (NT...		Potri.010G065500 [exp]	0	1
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.009G103100 [exp]	10.00	0.7895
AT4G02100			Heat shock protein DnaJ with t...		Potri.014G122300 [exp]	20.78	0.7315
AT5G65160		TPR14	tetratricopeptide repeat 14, t...		Potri.005G076800 [exp]	24.33	0.7636
AT3G17365			S-adenosyl-L-methionine-depend...		Potri.010G153200 [exp]	29.44	0.7870
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Potri.004G168800 [exp]	33.82	0.7788	VCCYP.1
AT3G18800			unknown protein		Potri.019G006500 [exp]	35.77	0.7746
AT1G10180			unknown protein		Potri.015G118500 [exp]	38.53	0.6955
AT1G53000		AtCKS, KDSB	CMP-KDO synthetase, Nucleotide...		Potri.011G120100 [exp]	38.57	0.7463
AT5G23420		HMGB6	high-mobility group box 6 (.1....		Potri.007G000900 [exp]	42.00	0.7454
AT1G06920	OFP	ATOFP4, OFP4	ARABIDOPSIS THALIANA OVATE FAM...		Potri.019G128500 [exp]	43.63	0.7487

Compare expression of checked genes

Potri.010G065500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.