Plant FIBer expression Database

Potri.010G065900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G05590 286 / 5e-96 TLD-domain containing nucleolar protein (.1.2)
AT4G39870 197 / 3e-60 TLD-domain containing nucleolar protein (.1.2)
AT5G06260 62 / 1e-10 TLD-domain containing nucleolar protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G075800
[exp]
215 / 3e-67 AT4G39870 405 / 1e-140 TLD-domain containing nucleolar protein (.1.2)
Potri.007G092700
[exp]
211 / 1e-65 AT4G39870 414 / 3e-144 TLD-domain containing nucleolar protein (.1.2)
Potri.006G206200
[exp]
68 / 2e-12 AT5G06260 604 / 0.0 TLD-domain containing nucleolar protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014476
[exp]
373 / 2e-129 AT2G05590 307 / 4e-104 TLD-domain containing nucleolar protein (.1.2)
Lus10023727
[exp]
343 / 5e-112 AT1G04500 315 / 3e-100 CCT motif family protein (.1)
Lus10041697
[exp]
194 / 7e-59 AT4G39870 419 / 4e-146 TLD-domain containing nucleolar protein (.1.2)
Lus10024053
[exp]
191 / 2e-54 AT4G39870 416 / 2e-137 TLD-domain containing nucleolar protein (.1.2)
Lus10021306
[exp]
66 / 1e-11 AT5G06260 574 / 0.0 TLD-domain containing nucleolar protein (.1)
Lus10016984
[exp]
45 / 5e-05 AT5G06260 460 / 5e-161 TLD-domain containing nucleolar protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07534 TLD TLD
Representative CDS sequence
>Potri.010G065900.1 pacid=42799421 polypeptide=Potri.010G065900.1.p locus=Potri.010G065900 ID=Potri.010G065900.1.v4.1 annot-version=v4.1
ATGAGTGCGTTTAAAGAAAAAGTCTCAAATCAACTATCTCGTCTCTTTGCCGGTTCACCCAATTCTTCTTCTCCTGATAATTCTCAGGCCAGGCCGTGCT
CTAAAGGGGAAAAATCATCTTCATATTTTCCCTTCGCCATCCCTTCACTAAGCTTTGTCGGGTCTAGATCGAACAAGCACCAGGATGAGTTAAAACCAAT
TCAATCACTTCCTGTTAGATGGAACGGTAAAGATCTTGAACAGCGAGAAGAATACTCAGATAGGTATCATGAATGCAGCACAATATGCGAGACAGAGGAA
TTCCAAAAATCTTGTAAAGACGACAAAGAATACAATGCAGCTTTTGAAAACAATCAAACTGTTAAAAGTCATGACGGTAATGATGATGCTGCCCCTGCAA
GGAGCAGTAGTGATAGTGATTTATTTGAAGAAGCAAATAATCAGACTCCACGAAAGCCTTTTCCCTGTCTCATGGATGAGTCCACTTTTATTTCCTCAGA
GCTGTATGAGTTCTTGCTCTCATCCCTTCCTAATATTGTGAAGGGATGCCAGTGGACCTTGCTGTACAGTACGTTGAAGCATGGCATATCACTTCATACA
CTTATTCGCAAGAGTGCTGCTGTTTCTGGTCCTTGTTTGCTGATTACCGGTGATAGACAAGGTGCTGTGTTTGGTGGGCTGCTAGAATGTCCATTGAAAC
CTACTGCCAAGAGAAAATATCAGGGGACAAACCAATCATTTGTATTTACAACCATTTATGGTGAACCAAGGATATTTAGACCAACTGGTGCCAACAGATA
TTACTACTTGTGCTTGAATGACATACTAGCACTTGGAGGTGGTGGCAACTTTGCCTTGTGCATGGATGGAGATCTGTTGAATGGAACTAGTGGACCTTGT
CAAACGTTTGGTAACTTGTGCCTGGCCCATAACCCAGAGTTTGAGTTAAAGAATGTTGAGCTCTGGGGGTTCACACATGCATCAAAATACCTTGCCTGA
AA sequence
>Potri.010G065900.1 pacid=42799421 polypeptide=Potri.010G065900.1.p locus=Potri.010G065900 ID=Potri.010G065900.1.v4.1 annot-version=v4.1
MSAFKEKVSNQLSRLFAGSPNSSSPDNSQARPCSKGEKSSSYFPFAIPSLSFVGSRSNKHQDELKPIQSLPVRWNGKDLEQREEYSDRYHECSTICETEE
FQKSCKDDKEYNAAFENNQTVKSHDGNDDAAPARSSSDSDLFEEANNQTPRKPFPCLMDESTFISSELYEFLLSSLPNIVKGCQWTLLYSTLKHGISLHT
LIRKSAAVSGPCLLITGDRQGAVFGGLLECPLKPTAKRKYQGTNQSFVFTTIYGEPRIFRPTGANRYYYLCLNDILALGGGGNFALCMDGDLLNGTSGPC
QTFGNLCLAHNPEFELKNVELWGFTHASKYLA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G05590 TLD-domain containing nucleola... Potri.010G065900
[exp]
0 1
AT2G38360 PRA1.B4 prenylated RAB acceptor 1.B4 (... Potri.016G126400
[exp]
8.36 0.5973
AT4G17260 Lactate/malate dehydrogenase f... Potri.001G122400
[exp]
11.61 0.5769
AT5G65650 Protein of unknown function (D... Potri.007G027700
[exp]
15.65 0.5626
AT3G05290 AtPNC1, PNC1 peroxisomal adenine nucleotide... Potri.005G033800
[exp]
19.74 0.5157
AT5G56170 LLG1 LORELEI-LIKE-GPI-ANCHORED PROT... Potri.001G471500
[exp]
21.16 0.5612
AT5G46910 Transcription factor jumonji (... Potri.003G096100
[exp]
32.00 0.5748
AT5G20680 TBL16 TRICHOME BIREFRINGENCE-LIKE 16... Potri.006G140300
[exp]
32.31 0.5341
AT1G80610 unknown protein Potri.001G313900
[exp]
32.74 0.5391
AT5G33320 ARAPPT, CUE1 PHOSPHOENOLPYRUVATE/PHOSPHATE ... Potri.012G082100
[exp]
36.74 0.5158
AT1G16300 GAPCP-2 glyceraldehyde-3-phosphate deh... Potri.010G172400
[exp]
42.20 0.5489

Potri.010G065900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.