Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33340 818 / 0 MAC3B MOS4-associated complex 3B (.1.2.3) AT1G04510 811 / 0 MAC3A MOS4-associated complex 3A (.1.2) AT2G41500 97 / 3e-21 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT5G08390 93 / 1e-19 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 92 / 2e-19 Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G49660 83 / 2e-17 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 84 / 1e-16 TAF5 TBP-associated factor 5 (.1) AT5G50230 80 / 9e-16 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 79 / 1e-15 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 80 / 2e-15 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G171600 [exp] 1036 / 0 AT2G33340 830 / 0.0 MOS4-associated complex 3B (.1.2.3) Potri.006G045800 [exp] 120 / 9e-29 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.010G255400 [exp] 97 / 7e-21 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 96 / 1e-20 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 88 / 5e-19 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 86 / 1e-17 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.011G045500 [exp] 86 / 2e-17 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.019G087200 [exp] 81 / 4e-16 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.005G148500 [exp] 80 / 4e-16 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023728 [exp] 869 / 0 AT2G33340 786 / 0.0 MOS4-associated complex 3B (.1.2.3) Lus10014477 [exp] 867 / 0 AT2G33340 784 / 0.0 MOS4-associated complex 3B (.1.2.3) Lus10021059 [exp] 130 / 3e-32 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 127 / 3e-31 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10013452 [exp] 92 / 5e-19 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10041007 [exp] 91 / 5e-19 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10024447 [exp] 91 / 8e-19 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10006916 [exp] 83 / 5e-17 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 82 / 6e-17 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 84 / 2e-16 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain CL0229 [poplar] [flax] PF08606 [poplar] [flax] Prp19 Prp19/Pso4-like
Representative CDS sequence Show only first row Show all	>Potri.010G066000.1 pacid=42799967 polypeptide=Potri.010G066000.1.p locus=Potri.010G066000 ID=Potri.010G066000.1.v4.1 annot-version=v4.1 ATGCATTGCTCAATTTCCGGCGAGGTTCCGGGAGAGCCCGTCGTCTCGAAGAGGTCTGGGATTTTATACGAGAAGCGCTTAATCGAGAGACACATATCGG AATATGGAAAATGCCCCATTACCGGGGAACCGCTTACCATGGATGATGTTGTTCCAGTCGAAACAGGAAAAATTGTGAAGCCGAGAACTGTACAGACCGC AAGCATCCCTGGGATGCTTGGAATGTTCCAGAATGAATGGGATGGCCTGATGTTGTCCAACTTTGCACTGGAGCAGCAATTACATACAGCAAGGCAAGAG CTAAGTCATGCATTATACCAGCATGATGCTGCTTGCCGTGTGATTGCAAGACTTAAAAAGGAAAGAGATGAAGCAAGGTCATTGCTTGCACAAGCAGAGA GGCAGGTACCCATGTTTACATCAGAAGCTGTTACAGCAAATGCTTCAGTTCTTAGCAATGGAAAACGAGCTGCCAAGGATGATGATTTGGCCCAACCTGG GAAGAGAATACGACCTGGAATTTCTGCTAGCATCATTACTGAGCTTACAGAATGTAATGCAGCTCTTTCGCAACAGCGTAAAAAGCGGCAGGTTCCTCCA ACATTGGCTCCTATTGATGCTCTAGAGAGGTACACCCAACTTTCTAGCCATCCACTTCACAGAACTAGCAAGCCGGGCATCTTATCTATCGATATACAAT ATTCGAAGGATATCATTGCTACTGGCGGGGCTGATGCAACTGCTGTAATCTTTGATCGGCCATCAGGGCAGATTGCATCTGCACTCAGTGGTCACTCAAA GAAGGTAACCAGTGTGAAATTTGTGGGTGAGGGTGAATTTTTCTTAACTGGATCAGCAGATAAGACAGTTCGAGTGTGGCAAGGATCTGAAGATGGGAAC TATGATTGCAGACACATCCTGAAGGATCATACTGCGGAGGTGCAAGCTGTCACTGTTCATGCCACAAATAACTACTTCGTGACTGCTTCTCTTGACAATA CATGGTGCTTCTATGATCTCTCCTCTGGTTTATGCTTGACTCAGGTTGCTGACACCTCCAAAACTGATGGCTATACATCTGCTGCCTTTCATCCTGATGG TCTCATCCTTGGAACAGGCACTTCAGAAGCAGTTGTTAAAATTTGGGATGTCAAAAGTCAGGCAAATGTTGCAAAATTTGAAGGCCATGTTGGACCTGTG ACAGCAATAACTTTCTCAGAAAATGGATACTTTCTGGCTACTGCTGCCCATGATAGTGTTAAGCTGTGGGATCTGAGGAAATTGAAAAACTTCCGGACGC TCAATCTCTATGATTCTGACACACCTACAAACTCTGTGGAGTTCGACCACAGTGGATCTTACCTTGGAATTTCAGGATCAGATATAAGAGTTTACCAAGT TGGCAGTGTTAAAGCAGATTGGAATTGTATCAAAACTCTTCCTGATTTGTCTGGCACAGGAAGAGCAACTTGTGTAAAATTTGGTCCTGAATCAAATTAC ATAGCTGTGGGATCGATGGATCACAACCTCCGGATATTTGGCTTGCCTGAGGATGAAGCTCCAGTGGAATCATAA
AA sequence Show only first row Show all	>Potri.010G066000.1 pacid=42799967 polypeptide=Potri.010G066000.1.p locus=Potri.010G066000 ID=Potri.010G066000.1.v4.1 annot-version=v4.1 MHCSISGEVPGEPVVSKRSGILYEKRLIERHISEYGKCPITGEPLTMDDVVPVETGKIVKPRTVQTASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQE LSHALYQHDAACRVIARLKKERDEARSLLAQAERQVPMFTSEAVTANASVLSNGKRAAKDDDLAQPGKRIRPGISASIITELTECNAALSQQRKKRQVPP TLAPIDALERYTQLSSHPLHRTSKPGILSIDIQYSKDIIATGGADATAVIFDRPSGQIASALSGHSKKVTSVKFVGEGEFFLTGSADKTVRVWQGSEDGN YDCRHILKDHTAEVQAVTVHATNNYFVTASLDNTWCFYDLSSGLCLTQVADTSKTDGYTSAAFHPDGLILGTGTSEAVVKIWDVKSQANVAKFEGHVGPV TAITFSENGYFLATAAHDSVKLWDLRKLKNFRTLNLYDSDTPTNSVEFDHSGSYLGISGSDIRVYQVGSVKADWNCIKTLPDLSGTGRATCVKFGPESNY IAVGSMDHNLRIFGLPEDEAPVES

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33340		MAC3B	MOS4-associated complex 3B (....		Potri.010G066000 [exp]	0	1
AT3G25940			TFIIB zinc-binding protein (.1...		Potri.013G015000 [exp]	5.74	0.7840
AT3G47930		ATGLDH	"L-galactono-1,4-lactone dehyd...		Potri.016G040300 [exp]	8.66	0.8036	Pt-ATGLDH.1
AT3G55510		RBL	REBELOTE, Noc2p family (.1)		Potri.008G043400 [exp]	10.86	0.8371
AT4G28510		ATPHB1	prohibitin 1 (.1)		Potri.017G017400 [exp]	14.00	0.7755	PHB1.2
AT1G29940		NRPA2	nuclear RNA polymerase A2 (.1)		Potri.001G030750 [exp]	15.09	0.8161
AT5G40200		DEGP9	DegP protease 9 (.1)		Potri.015G073100 [exp]	15.87	0.7565
AT1G52380			NUP50 (Nucleoporin 50 kDa) pro...		Potri.001G179100 [exp]	16.70	0.8370
AT3G59630			diphthamide synthesis DPH2 fam...		Potri.006G123700 [exp]	24.65	0.7525
AT2G18220			Noc2p family (.1)		Potri.001G012800 [exp]	24.91	0.7937
AT1G09620			ATP binding;leucine-tRNA ligas...		Potri.004G226700 [exp]	26.07	0.7853

Compare expression of checked genes

Potri.010G066000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.