Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-GMPM13.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26740 377 / 5e-134 CLO1, ATPXG1, ATS1 CALEOSIN1, ARABIDOPSIS THALIANA PEROXYGENASE 1, seed gene 1 (.1) AT5G55240 357 / 2e-126 ATPXG2 ARABIDOPSIS THALIANA PEROXYGENASE 2 (.1) AT2G33380 320 / 7e-112 AtCLO3, CLO-3, RD20 RESPONSIVE TO DESSICATION 20, Arabidopsis thaliana caleosin 3, Caleosin-related family protein (.1.2) AT5G29560 283 / 2e-97 caleosin-related family protein (.1) AT1G23240 160 / 2e-49 Caleosin-related family protein (.1.2.3) AT1G70670 159 / 1e-48 AtCLO4 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1) AT1G70680 145 / 1e-43 Caleosin-related family protein (.1) AT1G23250 0 / 1 Caleosin-related family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G133800 [exp] 192 / 7e-62 AT1G70670 272 / 4e-94 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1) Potri.010G107900 [exp] 185 / 5e-59 AT1G70670 272 / 4e-94 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023732 [exp] 377 / 6e-134 AT4G26740 360 / 3e-127 CALEOSIN1, ARABIDOPSIS THALIANA PEROXYGENASE 1, seed gene 1 (.1) Lus10011775 [exp] 374 / 5e-133 AT4G26740 361 / 1e-127 CALEOSIN1, ARABIDOPSIS THALIANA PEROXYGENASE 1, seed gene 1 (.1) Lus10034325 [exp] 144 / 6e-43 AT1G70670 197 / 3e-64 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1) Lus10041446 [exp] 137 / 2e-40 AT1G70670 203 / 2e-67 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1) Lus10014588 [exp] 133 / 7e-39 AT1G70670 197 / 6e-65 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF05042 [poplar] [flax] Caleosin Caleosin related protein
Representative CDS sequence Show only first row Show all	>Potri.010G066600.1 pacid=42797866 polypeptide=Potri.010G066600.1.p locus=Potri.010G066600 ID=Potri.010G066600.1.v4.1 annot-version=v4.1 ATGGACGGGGAGATCGAGAAGGATTCACTGGCAAGAGAAGCACCTTATGCACCTGTTACTCATGAGAGACCTGTTCGTGATGATTTGGATGATAAAATCC CAAAGCCTTACATGGCAAGAGGTTTGCAAGCTCCCGATACAGAAAATCCTTATGGAACACCGGGACATAAGCATCGCGGGTTGAGTGTCCTTCAGCAACA TGTAGCCTTTTTCGACCTAGATGAAAATGGAATAGTTTACCCTTGGGAGACTTACACTGGATTGCGTGCAATTGGTTTCAATATAATTGCCTCTCTTATA GTGGCTGCTGTCATCAACGGAGCTTTGAGCTATGCTACTCTTCCTGGATGGTTCCCTTCTCCCTTTTTTCCGGTACACATACACAACATACACAAAGCCA AGCATGGGAGCGACTCTGGAACTTATGACACAGAAGGAAGATACATACCAGTGAATTTCGAGAGCATTTTCAGCAAGTATGCTAATACAAAGCCAGACAA GTTGTCACTCAGAGAGCTCTGGAAAATGACCGAGGGACAACGGGTCGCCTTCGATATATTTGGATGGATGGGAGCTAAGTTAGAATGGGGCCTTCTCTAT GTTCTGGCAAAGGATGAAGAAGGATTCCTGTCTAAAGAAGCTATAAGACGATGTTTTGATGGTAGTTTATTCGAGTATTGCGCCAAAATGAACAGGGGTG CTGAAGCTAAGATGCGCTAA
AA sequence Show only first row Show all	>Potri.010G066600.1 pacid=42797866 polypeptide=Potri.010G066600.1.p locus=Potri.010G066600 ID=Potri.010G066600.1.v4.1 annot-version=v4.1 MDGEIEKDSLAREAPYAPVTHERPVRDDLDDKIPKPYMARGLQAPDTENPYGTPGHKHRGLSVLQQHVAFFDLDENGIVYPWETYTGLRAIGFNIIASLI VAAVINGALSYATLPGWFPSPFFPVHIHNIHKAKHGSDSGTYDTEGRYIPVNFESIFSKYANTKPDKLSLRELWKMTEGQRVAFDIFGWMGAKLEWGLLY VLAKDEEGFLSKEAIRRCFDGSLFEYCAKMNRGAEAKMR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G26740		CLO1, ATPXG1, A...	CALEOSIN1, ARABIDOPSIS THALIAN...		Potri.010G066600 [exp]	0	1	Pt-GMPM13.1
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Potri.019G003400 [exp]	2.44	0.8417
AT5G04760	MYB		Duplicated homeodomain-like su...		Potri.010G240800 [exp]	8.83	0.8138
AT3G22260			Cysteine proteinases superfami...		Potri.016G019700 [exp]	9.38	0.7827
AT5G49525			unknown protein		Potri.010G148300 [exp]	12.00	0.7855
					Potri.010G196500 [exp]	12.40	0.7879
AT1G60710		ATB2	NAD(P)-linked oxidoreductase s...		Potri.013G040000 [exp]	12.64	0.7927
AT5G67265			unknown protein		Potri.002G122800 [exp]	14.00	0.7930
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Potri.010G061800 [exp]	14.96	0.7792
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Potri.012G077200 [exp]	18.46	0.7672
AT3G20570		AtENODL9	early nodulin-like protein 9 (...		Potri.018G129000 [exp]	20.73	0.7833

Compare expression of checked genes

Potri.010G066600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.