Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13890 49 / 1e-06 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G170900 [exp] 403 / 8e-143 AT5G13890 50 / 7e-07 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3) Potri.002G237200 [exp] 49 / 2e-06 AT5G13890 220 / 3e-70 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011779 [exp] 283 / 3e-95 AT1G32120 69 / 9e-13 unknown protein Lus10023735 [exp] 157 / 1e-47 AT1G32120 51 / 1e-07 unknown protein Lus10023736 [exp] 77 / 7e-18 ND / Lus10012588 [exp] 57 / 3e-09 AT5G13890 341 / 9e-118 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3) Lus10041505 [exp] 57 / 3e-09 AT5G13890 335 / 2e-115 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04819 [poplar] [flax] DUF716 Family of unknown function (DUF716)
Representative CDS sequence Show only first row Show all	>Potri.010G067000.1 pacid=42798001 polypeptide=Potri.010G067000.1.p locus=Potri.010G067000 ID=Potri.010G067000.1.v4.1 annot-version=v4.1 ATGGCATCACTTGTAACCCATTTGTGCGTCACTCTTCTCCTTCTCCCTATAGGCATCCGCCGTCTCTTTTGCTCGTCTTCTCTTTACCTCAAGAACCCAT CTCTTTTTAGATCCAAAACATGGTACCTCTCTGATCCCAAATGGAAAAATCTTGATTTGTACGTCCTCACCGTAGCCCTCCCTATCGCTTCTTTTTCTTT AATCTTTCTTTTCCTCTCCATTACTACTGGTCACACAACTTACCGTTTCTCCTTCTTGCATGAATCATTGCTTCTTTTTCTTTACTGGGTTTTGGCAATT TTGTTCGTTTTACGTGATGCCATTGACCCTGTAGTCATTCTTGATAATTTCTTGTTTGTGTTTGGTGGGATTTTGTTTTTCGTAGAGTACTCTTTTATTG GTGAGGGCACTTCTGGTCTTGTTGTCGAGGTTGTTTATGGTTTGTGTGGTGATTTGAGTCTTGTTTGTGGGTTTTGTTGTTTGTATTTGGCTATTAGGCC TGGTGCATTTTTTGCTGAGTTTTGTTTCTGTTGTGGGTTGGTTTTGAAAGGGACTTGGTTTTTACAAGCTGGGTTGTGTTTGTATACTGATGTTTTTGGT TTTAAAGGGTGTCATGAGATTGAGATTTTGCCTGGAAGTGGAAATGTTGAGTTGAAGTGTGATCTTGAGGAGGATGGGTTGAGGGGTGTGGCATTGGTGA ATTTGATGTTTGTTGGGCATGCAATCGTGGTCTTTCTTGTGAGTTTGGGGTTGTTTGGATTGTTGTCAAGTAATAGGGATTTGAGGCATGGTGAAGCAAG TGGTCCTTTGCTGGCAGGGCTTGATTCTGAGAGTGCTTTGATGCGGGCGCTTCCTGAATTTGAAGTGGAATGA
AA sequence Show only first row Show all	>Potri.010G067000.1 pacid=42798001 polypeptide=Potri.010G067000.1.p locus=Potri.010G067000 ID=Potri.010G067000.1.v4.1 annot-version=v4.1 MASLVTHLCVTLLLLPIGIRRLFCSSSLYLKNPSLFRSKTWYLSDPKWKNLDLYVLTVALPIASFSLIFLFLSITTGHTTYRFSFLHESLLLFLYWVLAI LFVLRDAIDPVVILDNFLFVFGGILFFVEYSFIGEGTSGLVVEVVYGLCGDLSLVCGFCCLYLAIRPGAFFAEFCFCCGLVLKGTWFLQAGLCLYTDVFG FKGCHEIEILPGSGNVELKCDLEEDGLRGVALVNLMFVGHAIVVFLVSLGLFGLLSSNRDLRHGEASGPLLAGLDSESALMRALPEFEVE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13890			Family of unknown function (DU...		Potri.010G067000 [exp]	0	1
AT5G01980			RING/U-box superfamily protein...		Potri.016G141600 [exp]	1.00	0.9363
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Potri.016G051900 [exp]	1.41	0.9359
AT2G22560			Kinase interacting (KIP1-like)...		Potri.005G147300 [exp]	3.16	0.8948
AT1G22060			unknown protein		Potri.008G029800 [exp]	6.48	0.9048
					Potri.004G011300 [exp]	10.00	0.8696
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Potri.010G067100 [exp]	10.39	0.8868
AT3G11470			4'-phosphopantetheinyl transfe...		Potri.006G211300 [exp]	10.67	0.8741
AT4G27220			NB-ARC domain-containing disea...		Potri.011G127200 [exp]	11.83	0.8852
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Potri.018G125284 [exp]	13.11	0.8951
AT3G14170			Plant protein of unknown funct...		Potri.003G070200 [exp]	14.28	0.8932

Compare expression of checked genes

Potri.010G067000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.