Plant FIBer expression Database

Potri.010G067100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G33385 410 / 5e-143 ARPC2B actin-related protein C2B (.1.2)
AT1G30825 216 / 1e-67 DIS2, ARPC2, ARPC2A DISTORTED TRICHOMES 2, ACTIN-RELATED PROTEIN C2A, Arp2/3 complex, 34 kD subunit p34-Arc (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G170800
[exp]
665 / 0 AT2G33385 410 / 2e-142 actin-related protein C2B (.1.2)
Potri.003G157700
[exp]
232 / 8e-74 AT1G30825 429 / 5e-152 DISTORTED TRICHOMES 2, ACTIN-RELATED PROTEIN C2A, Arp2/3 complex, 34 kD subunit p34-Arc (.1)
Potri.001G073300
[exp]
229 / 2e-72 AT1G30825 449 / 1e-159 DISTORTED TRICHOMES 2, ACTIN-RELATED PROTEIN C2A, Arp2/3 complex, 34 kD subunit p34-Arc (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023737
[exp]
541 / 0 AT2G33385 397 / 1e-137 actin-related protein C2B (.1.2)
Lus10011780
[exp]
290 / 6e-95 AT2G33385 228 / 9e-71 actin-related protein C2B (.1.2)
Lus10008071
[exp]
230 / 4e-73 AT1G30825 456 / 6e-163 DISTORTED TRICHOMES 2, ACTIN-RELATED PROTEIN C2A, Arp2/3 complex, 34 kD subunit p34-Arc (.1)
Lus10002867
[exp]
132 / 8e-36 AT1G30825 223 / 1e-71 DISTORTED TRICHOMES 2, ACTIN-RELATED PROTEIN C2A, Arp2/3 complex, 34 kD subunit p34-Arc (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04045 P34-Arc Arp2/3 complex, 34 kD subunit p34-Arc
Representative CDS sequence
>Potri.010G067100.1 pacid=42799132 polypeptide=Potri.010G067100.1.p locus=Potri.010G067100 ID=Potri.010G067100.1.v4.1 annot-version=v4.1
ATGGCATGCTTTGATAGGGTGTCGCCCGCGCTCAGGGAGATCCTGCTCAAGCTATACCGCGCTGAGAAGCCTGTGGAGATTGACCATCACTTGTATGAAT
TTGGGTCTGTGGAATACCATGTTCAGTCTTCAGCAGCTGATCCACAACATAACTACTTGTCAATATCAACTCCACTACTATCCCAAGGAGCCCTGCTATC
ATACGGGTTGTCATCATACACCATGCAGATGGTAAAACAAGTTTGCTCGGATGCTGTGGAGATTGTTGAACCTGCAAAAGAAGGATATCAGCTAACCCTA
AAGCTAAATTTTGCTAAGGTTCCAATTGGAAAAGACTCTGAAAAAGTGATTACACAAATTTCGTCAGTGCAAGCAGTTATACTAAGTTCCCAGCTGAAAG
AAATGTTGAGAAATGTCAACTCCCAGGATACATCCCAAGGAATGAATAAGCCAATTAAACTTGTCTATCACCCAAGAGAACCCTTCTATGTCATCAGACA
GCCACAAAAAATCACAGCAGTATTCCCAATGCGTTTTAGAGAGCACTCAGATGTGATTATTGCGACAGCCTTCTTTCAGGAACTCATGGATGTGGGCAGC
TCAGAAAAATGGGCTAAAGCTCCACCTTGCACCTGGTCACCCATTCCTCCACCAGAACTGAGAGGAGAACCTTTAGAAGATTTAAGCACCAATGGAGGGT
TTGTCTCTTTTGATATCTCTTCACGCCATGTTGAAGGTAAAAAACTAGACAAAACTGTATGGAGTCTATTAAACTTCTATGCCTACGTGAAAAACCACGT
AAAGTGCACCAGAGGTTTCATACAAAGAAGGATGCAAAAGCGTTTGGAAAGTTTGGTTGAGGTCCTGCACGAGGAAAAATTGGAAGAAAATGGAAATGTT
AAGAAGGTCAAAGCACATGCAGAAAGCAGGCATGGTGGAAAACTGGTAAGATTATCAAAACCAAAAAACTTCAAAAGAAGATGTCGTGATTTAACCAAGA
AGATCATGCAAATTCGTTTTCGGATTAAAATCCATGGATTTCGGCATTTTCGTAGACGATGGTTGACAATCCCAAAGTTCTCTTCTCCACTAGGATATAC
TAAACTAGAATAA
AA sequence
>Potri.010G067100.1 pacid=42799132 polypeptide=Potri.010G067100.1.p locus=Potri.010G067100 ID=Potri.010G067100.1.v4.1 annot-version=v4.1
MACFDRVSPALREILLKLYRAEKPVEIDHHLYEFGSVEYHVQSSAADPQHNYLSISTPLLSQGALLSYGLSSYTMQMVKQVCSDAVEIVEPAKEGYQLTL
KLNFAKVPIGKDSEKVITQISSVQAVILSSQLKEMLRNVNSQDTSQGMNKPIKLVYHPREPFYVIRQPQKITAVFPMRFREHSDVIIATAFFQELMDVGS
SEKWAKAPPCTWSPIPPPELRGEPLEDLSTNGGFVSFDISSRHVEGKKLDKTVWSLLNFYAYVKNHVKCTRGFIQRRMQKRLESLVEVLHEEKLEENGNV
KKVKAHAESRHGGKLVRLSKPKNFKRRCRDLTKKIMQIRFRIKIHGFRHFRRRWLTIPKFSSPLGYTKLE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G33385 ARPC2B actin-related protein C2B (.1.... Potri.010G067100
[exp]
0 1
Potri.005G211000
[exp]
1.41 0.9205
AT3G05270 Plant protein of unknown funct... Potri.005G070400
[exp]
1.73 0.9194
AT4G28640 AUX_IAA IAA11 indole-3-acetic acid inducible... Potri.002G256600
[exp]
2.00 0.9254 Pt-IAA11.1
AT3G07510 unknown protein Potri.002G239500
[exp]
2.23 0.9066
AT4G32280 AUX_IAA IAA29 indole-3-acetic acid inducible... Potri.006G255200
[exp]
3.16 0.8898
AT1G63830 PLAC8 family protein (.1.2.3) Potri.003G130700
[exp]
3.46 0.9098
AT3G08500 MYB ATMYB83 myb domain protein 83 (.1) Potri.001G267300
[exp]
3.46 0.8979
AT2G33385 ARPC2B actin-related protein C2B (.1.... Potri.008G170800
[exp]
4.69 0.8870
Potri.013G028450
[exp]
7.14 0.8785
AT4G32330 TPX2 (targeting protein for Xk... Potri.018G027500
[exp]
9.59 0.8663

Potri.010G067100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.