Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33400 79 / 2e-16 unknown protein AT5G44040 59 / 2e-09 unknown protein AT1G04030 51 / 7e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G170600 [exp] 426 / 7e-150 AT2G33400 69 / 2e-13 unknown protein Potri.013G047700 [exp] 66 / 7e-12 AT1G04030 147 / 1e-39 unknown protein Potri.002G258501 [exp] 64 / 5e-11 AT1G04030 172 / 1e-48 unknown protein Potri.002G057000 [exp] 47 / 2e-05 AT1G06660 325 / 7e-106 JASON, unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011782 [exp] 147 / 3e-41 AT2G33400 83 / 3e-18 unknown protein Lus10023739 [exp] 137 / 1e-37 AT2G33400 95 / 1e-22 unknown protein Lus10003613 [exp] 55 / 5e-08 AT1G04030 211 / 1e-63 unknown protein Lus10008231 [exp] 47 / 2e-05 AT1G04030 202 / 1e-59 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G067300.2 pacid=42798452 polypeptide=Potri.010G067300.2.p locus=Potri.010G067300 ID=Potri.010G067300.2.v4.1 annot-version=v4.1 ATGGGTTGCTTTCTTGGCTGTTTCGGCTTGTCTTCAAAGAGAAAGCGTAGAAAACCGGGTTATAGAGACCATAAGCTTTGTAGTTATGAACCTCTAGATT CTGTTTCTACAAACCTTGCCATTACAGGGAAGCCCGTAACCTCTGAAGCTGAACTCAGCAAAAGACCCAAGGATTCCTTGAACTATAAAGTTAGAAAGAA GGTGAGCTTCAATTTGAATGTTCAGACTTATGAGCCAATTCCGAAAGAGGTAAGCACGAGTGATTACTGGGGAAGTGATGAGGAAGAGACTAGCAAAGAT GATGCAAACGAAAGGCAATCTTCTTCTCTCTCTGAAGCGGATTCAATCGCGTCCAAAATGGCGTCTTATCCAACAAATTATAGATATAGAAACTGCATTG ACAGCTATGATGAAGAGGATGGAATAGCGTATGAAGAAAGTGATTTGGATGGTGATGATGATGAATTCGATGACGAAGAAGAAGAAGAAGAAGATGATGA TGATAACAATGGCTGCAATATAGATGAATTGAGAGTAAATCAAAAGGAATTTTCTGGGCAATTCAGCTCCCTATCTGCGAGTTCACAGAATAAAAATTCT TCGACAAAGCTGCGAAAGGATACAACTGAAAATCTAAAGTCCCTTGGTGACTCAAATGAGGGAGGATTGAGATCGCGTCAATATGTTCATTCTGTGCTGA AACCAGTGGAAAATCTCAATCAATGGAAAGTAGTGAAGGCAAGAGGAACGCAACCACCTAAGCAACAGATGAAAGAAAATGTGGCCCTTGAGGAACACCC GCTGAAACCCCTTAGTTCAATCTCGAATATCAGTCACTCCACACCTCTCATGCAAGAAATTGCAGTTGATGCCAGCCTCTCAAACTGGGTGGTTCCTCCT GATTCTTACCAGAAGATAACTGCATCCAATGATGTTGAGACCAAGGCGCCATCAAAGAAAGCTTGTTTGACAGACAGTACATATTCATGGAGAAATAGAG AAGATCTGCCCATTTTAGACATTATCAACTTGGAGGCCTGA
AA sequence Show only first row Show all	>Potri.010G067300.2 pacid=42798452 polypeptide=Potri.010G067300.2.p locus=Potri.010G067300 ID=Potri.010G067300.2.v4.1 annot-version=v4.1 MGCFLGCFGLSSKRKRRKPGYRDHKLCSYEPLDSVSTNLAITGKPVTSEAELSKRPKDSLNYKVRKKVSFNLNVQTYEPIPKEVSTSDYWGSDEEETSKD DANERQSSSLSEADSIASKMASYPTNYRYRNCIDSYDEEDGIAYEESDLDGDDDEFDDEEEEEEDDDDNNGCNIDELRVNQKEFSGQFSSLSASSQNKNS STKLRKDTTENLKSLGDSNEGGLRSRQYVHSVLKPVENLNQWKVVKARGTQPPKQQMKENVALEEHPLKPLSSISNISHSTPLMQEIAVDASLSNWVVPP DSYQKITASNDVETKAPSKKACLTDSTYSWRNREDLPILDIINLEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33400			unknown protein		Potri.010G067300 [exp]	0	1
AT1G04030			unknown protein		Potri.002G258501 [exp]	1.00	0.9857
AT4G31840		AtENODL15	early nodulin-like protein 15 ...		Potri.006G184100 [exp]	3.00	0.9671
AT5G03870			Glutaredoxin family protein (....		Potri.006G212700 [exp]	3.00	0.9746
AT5G16250			unknown protein		Potri.008G078000 [exp]	3.16	0.9763
AT5G01420			Glutaredoxin family protein (....		Potri.008G016100 [exp]	3.46	0.9720
AT1G26760		SDG35, ATXR1	SET domain protein 35 (.1)		Potri.008G089500 [exp]	3.87	0.9724	SDG942
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.009G103200 [exp]	4.58	0.9702
AT5G04320			Shugoshin C terminus (.1.2)		Potri.009G006100 [exp]	7.48	0.9728
AT1G72250			Di-glucose binding protein wit...		Potri.011G140000 [exp]	7.74	0.9652
AT4G14330			P-loop containing nucleoside t...		Potri.008G169000 [exp]	8.00	0.9686

Compare expression of checked genes

Potri.010G067300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.