Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23510 640 / 0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) AT3G23530 637 / 0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) AT3G23470 597 / 0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) AT3G23480 555 / 0 Cyclopropane-fatty-acyl-phospholipid synthase (.1.2) AT3G23460 212 / 4e-65 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G33110 100 / 6e-23 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G33120 92 / 2e-20 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G30920 45 / 7e-05 ATCOQ3, EMB3002 embryo defective 3002, coenzyme Q 3 (.1) AT1G76090 43 / 0.0003 SMT3 sterol methyltransferase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G067700 [exp] 872 / 0 AT3G23530 652 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067800 [exp] 869 / 0 AT3G23510 650 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067600 [exp] 867 / 0 AT3G23510 647 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.008G170300 [exp] 714 / 0 AT3G23510 1408 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067900 [exp] 705 / 0 AT3G23530 1392 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.018G060000 [exp] 101 / 2e-23 AT4G33110 585 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.013G077000 [exp] 55 / 5e-08 AT1G64970 441 / 8e-156 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Potri.018G018900 [exp] 43 / 0.0004 AT5G66360 436 / 8e-153 adenosine dimethyl transferase 1B, Ribosomal RNA adenine dimethylase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023741 [exp] 642 / 0 AT3G23530 1294 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Lus10011784 [exp] 635 / 0 AT3G23530 1253 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Lus10014230 [exp] 88 / 1e-18 AT4G33110 508 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10022684 [exp] 85 / 1e-17 AT4G33110 516 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08241 [poplar] [flax] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.010G067567.1 pacid=42799265 polypeptide=Potri.010G067567.1.p locus=Potri.010G067567 ID=Potri.010G067567.1.v4.1 annot-version=v4.1 ATGGCCGCTGCAAATTGTTCCTCTGGAGAGACTTGTGCTGCTCTGATCCATGGAAAACAAATGGCACCTTCTCGGTTACAAGCTTGGGCTCGTCTTTTTG TTACTAAATTTCTTGGAAGTCATATCTCCACTGACCATTTAATCTTAGAGGAGGAAGGGGGTTCAACTTTCACCTTCGAGGGAACTAGTAAAAAATGTTC TCTAGAAGTTGTTCTCAAAGTTCACAATCCTCAGTTTTACTGGAAGGTAATGACGCGGGCTGACATAGGCCTTGCAGATGCTTATATTGATGGAGATTTT TCTTTTGCTGACAAAGACCAAGGTCTTCTAGATCTTTTCATGGTTCTGATTGCGAACAGAGATGCAAACAAATCTATCTCCAAGGCGAATAAGAAAAGGG GTTGGTGGACACCATCGTTATTTACAGCAGGTATTGCTTCCGCAAAGTTTTTCCTTCAGCATGTTCTGAGGCAAAATACTCTTACTCAAGCTCGCAGGAA CATCTCTCGTCATTATGACCTGAGTAACGAGGTTTTTTCTCTATTCCTGGGAGAAACAATGGCGTACTCGTGTGCAATATTTAAGACTGAAGATGAAGAC TTGAATACAGCTCAGTTGAGGAAAATCTCTATTCTGATTGAAAAAGCAAGAATCGATAAGAAGCATGAAATTCTTGACATTGGTTGTGGCTGGGGAACTT TTGCTATTGAAGTTGTCAAACAAACAGGATGCAAATACACGGGTCTCACTCTATCTGTGGAGCAACTGAAATATGCAGAAATGAAAGTCAAGGAAGCTGG TCTGCAGGATAATATCAGACTTCTCCTCTGTGATTATCGTGAATTGCCTAAAGGCTATAAATACGATAGAATCGTATCTTGTGAAATGATAGAGCATGTG GGTCATGAATACATGGAGGATTTTTTTAGTAGCTGCGAATCAGCATTGGCAGAAGATGGGCTTCTTGTTCTACAGTCTATATCAATAGCAGATGAGTGTT ATGATGAGCACAGGCGAAGTTCTTGTTTTATGAGGGAATATATTTTTCCTGGTGGATGTTTGCCTTCATTAAGTAGGATAACATCAGCCATGGGTGTAGC ATCAAGACTCTGCGTGGAGCATGTGGAAAATATAGGAAGTCATTACTATCATACGTTAAGAAGGTGGAGGAAAACTTTCTTGGAAAACAAGAGCAAAATT CTTGCCATGGGATTCGATGAAAAGTTCATCAGGACATGGGAGTATTATTTTGACTACTGCGCTGCTGGTTTCAAGTCGTATACCCTTGGGGATTATCAGA TTGTATTTTCACGTCCTGGCAATGTCGGAGTATTAGGTAATCCATACAAAGGTTTTCCATCGGCATATCGACACCTTCTCTGA
AA sequence Show only first row Show all	>Potri.010G067567.1 pacid=42799265 polypeptide=Potri.010G067567.1.p locus=Potri.010G067567 ID=Potri.010G067567.1.v4.1 annot-version=v4.1 MAAANCSSGETCAALIHGKQMAPSRLQAWARLFVTKFLGSHISTDHLILEEEGGSTFTFEGTSKKCSLEVVLKVHNPQFYWKVMTRADIGLADAYIDGDF SFADKDQGLLDLFMVLIANRDANKSISKANKKRGWWTPSLFTAGIASAKFFLQHVLRQNTLTQARRNISRHYDLSNEVFSLFLGETMAYSCAIFKTEDED LNTAQLRKISILIEKARIDKKHEILDIGCGWGTFAIEVVKQTGCKYTGLTLSVEQLKYAEMKVKEAGLQDNIRLLLCDYRELPKGYKYDRIVSCEMIEHV GHEYMEDFFSSCESALAEDGLLVLQSISIADECYDEHRRSSCFMREYIFPGGCLPSLSRITSAMGVASRLCVEHVENIGSHYYHTLRRWRKTFLENKSKI LAMGFDEKFIRTWEYYFDYCAAGFKSYTLGDYQIVFSRPGNVGVLGNPYKGFPSAYRHLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23510			Cyclopropane-fatty-acyl-phosph...		Potri.010G067567 [exp]	0	1
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Potri.008G017500 [exp]	4.00	0.8645
AT2G26170		CYP711A1, MAX1	MORE AXILLARY BRANCHES 1, "cyt...		Potri.018G062100 [exp]	5.19	0.8413	Pt-CYP711.2
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Potri.006G206900 [exp]	8.71	0.8650
AT1G34110			Leucine-rich receptor-like pro...		Potri.005G198000 [exp]	18.30	0.8289
AT5G12460			Protein of unknown function (D...		Potri.009G051600 [exp]	19.28	0.8170
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Potri.002G044900 [exp]	20.49	0.8268	Pt-AUX28.3
AT3G17650		YSL5, PDE321	pigment defective 321, YELLOW ...		Potri.004G069300 [exp]	33.91	0.7962
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Potri.001G325200 [exp]	42.48	0.8048	Pt-SRG3.1
AT5G49900			Beta-glucosidase, GBA2 type fa...		Potri.004G227200 [exp]	46.95	0.7654
AT3G52820		ATPAP22, PAP22	purple acid phosphatase 22 (.1...		Potri.003G030700 [exp]	47.71	0.8213

Compare expression of checked genes

Potri.010G067567 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.