Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23510 653 / 0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) AT3G23530 652 / 0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) AT3G23470 602 / 0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) AT3G23480 555 / 0 Cyclopropane-fatty-acyl-phospholipid synthase (.1.2) AT3G23460 222 / 3e-69 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G33110 98 / 2e-22 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G33120 91 / 1e-19 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G76090 45 / 5e-05 SMT3 sterol methyltransferase 3 (.1) AT2G30920 43 / 0.0004 ATCOQ3, EMB3002 embryo defective 3002, coenzyme Q 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G067600 [exp] 940 / 0 AT3G23510 647 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067567 [exp] 904 / 0 AT3G23510 640 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067800 [exp] 895 / 0 AT3G23510 650 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.008G170300 [exp] 726 / 0 AT3G23510 1408 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067900 [exp] 719 / 0 AT3G23530 1392 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.018G060000 [exp] 99 / 1e-22 AT4G33110 585 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.013G077000 [exp] 53 / 2e-07 AT1G64970 441 / 8e-156 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Potri.018G018900 [exp] 44 / 0.0001 AT5G66360 436 / 8e-153 adenosine dimethyl transferase 1B, Ribosomal RNA adenine dimethylase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023741 [exp] 653 / 0 AT3G23530 1294 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Lus10011784 [exp] 649 / 0 AT3G23530 1253 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Lus10014230 [exp] 85 / 6e-18 AT4G33110 508 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10022684 [exp] 82 / 1e-16 AT4G33110 516 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08241 [poplar] [flax] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.010G067700.2 pacid=42797961 polypeptide=Potri.010G067700.2.p locus=Potri.010G067700 ID=Potri.010G067700.2.v4.1 annot-version=v4.1 ATGGCCGCTGCAAATTGTTCCTCTGGAGAGACTTGTGCTGCTCTGATCCATGGAAAACAAATGGCACCTTCTCGGTTACAAGCTTGGGCTCGTCTTTTTG TTACTAAATTTCTTGGAAGTCATATCTCCACTGACCATTTAATCTTAGAGGAGGACGGGGGTGCAACTTTCACCTTCGAGGGAACTAGTAAAAGATTTTC TCTAGAAGTTGTTCTCAAAGTTCACAATCCTCGGTTTTACTGGAAGGTAACGACGCGGGCTGACATAGGCCTTGCAGATGCTTATATTGATGGAGATTAT TCTTTTGCTGACAAAGACCAAGGTCTTCTACATCTTATCATGGTTCTGATTGCGAACAGAGATGCAAACAAATCTATCTCCAAGGCGAATAACAAAAGGG GTTGGTGGACACCATCGTTATTTACAGCAGGTATTGCTTCCGCAAAGTTTTTCCTTCAGCATGTTCTGAGGCAAAATACTCTTACACAAGCTCGCAGGAA CATCTCTCGTCATTATGACCTGAGTAACGAGGTTTTTTCTCTATTCCTGGGAGAAACAATGGCGTACTCGTGTGCAATATTTAAGACTGAAGATGAAGAC TTGAATACAGCTCAGTTGAGGAAAATCTCTGTTCTGATTGAAAAAGCAAGAATCGATAAGAAGCATGAAATTCTTGAAATTGGTTGTGGCTGGGGAACTT TTGCTATTGAAGTTGTCAAACAAACAGGATGCAAATACACGGGTCTCACTCTATCTGTGGAGCAACTGAAATATGCAGAAATGAAAGTCAAGGAAGCTGG TCTGCAGGATAATATCAGACTTCTCCTCTGTGATTATCGTGAATTGCCTGAAGGCTATAAATACGATAGAATCGTATCTTGTGAAATGATAGAGCATGTG GGTCATGAATACATGGAGGATTTTTTTAGTAGCTGCGAATCAGCATTGGCAGAAGATGGGCTTCTTGTTCTACAGTCTACATCTATAGCAGATGAGCGTT ATGATGAGTACAGGCGAAGTTCTGATTTTATCAAGGAATATATTTTTCCCGGTGGATGTTTGCCCTCATTGAGTAGGATAACATCAGCCATGGGTGTAGC ATCAAGACTCTGTGTGGAGCATGTGGAAAATATAGGAAGTCATTACTATCTTACGTTAAGATGCTGGAAAAAATATTTCTTGGAAAACAAGAGCAAAATT CTTGCCATGGGATTCGATGAAAAGTTCATCAGGACATGGGAGTATTATTTTGACTACAGCGCTGCAGGTTTCAAGTCGTATGCCCTTGGGAATTATCAGA TTGTATTTTCACGTCCTGGCAATGTCGGAGTATTAGGTAATCCATACAAAGGTTTTCCATCGGCATATCGACACCTTCTCTGA
AA sequence Show only first row Show all	>Potri.010G067700.2 pacid=42797961 polypeptide=Potri.010G067700.2.p locus=Potri.010G067700 ID=Potri.010G067700.2.v4.1 annot-version=v4.1 MAAANCSSGETCAALIHGKQMAPSRLQAWARLFVTKFLGSHISTDHLILEEDGGATFTFEGTSKRFSLEVVLKVHNPRFYWKVTTRADIGLADAYIDGDY SFADKDQGLLHLIMVLIANRDANKSISKANNKRGWWTPSLFTAGIASAKFFLQHVLRQNTLTQARRNISRHYDLSNEVFSLFLGETMAYSCAIFKTEDED LNTAQLRKISVLIEKARIDKKHEILEIGCGWGTFAIEVVKQTGCKYTGLTLSVEQLKYAEMKVKEAGLQDNIRLLLCDYRELPEGYKYDRIVSCEMIEHV GHEYMEDFFSSCESALAEDGLLVLQSTSIADERYDEYRRSSDFIKEYIFPGGCLPSLSRITSAMGVASRLCVEHVENIGSHYYLTLRCWKKYFLENKSKI LAMGFDEKFIRTWEYYFDYSAAGFKSYALGNYQIVFSRPGNVGVLGNPYKGFPSAYRHLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23530			Cyclopropane-fatty-acyl-phosph...		Potri.010G067700 [exp]	0	1
AT3G23510			Cyclopropane-fatty-acyl-phosph...		Potri.010G067600 [exp]	1.00	0.9908
					Potri.003G204450 [exp]	1.41	0.9872
					Potri.019G016100 [exp]	2.44	0.9825
AT1G03055			unknown protein		Potri.002G046500 [exp]	2.82	0.9818
AT1G52540			Protein kinase superfamily pro...		Potri.012G132200 [exp]	6.00	0.9727
					Potri.001G019985 [exp]	6.48	0.9735
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.004G021100 [exp]	7.21	0.9628
AT1G52540			Protein kinase superfamily pro...		Potri.015G134500 [exp]	9.38	0.9706
					Potri.001G019795 [exp]	9.48	0.9710
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.001G228200 [exp]	10.24	0.9675

Compare expression of checked genes

Potri.010G067700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.