Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23530 1392 / 0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) AT3G23510 1389 / 0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) AT3G23470 678 / 0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) AT3G23480 636 / 0 Cyclopropane-fatty-acyl-phospholipid synthase (.1.2) AT3G23460 268 / 6e-83 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G33110 93 / 5e-20 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G33120 85 / 2e-17 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G76090 55 / 1e-07 SMT3 sterol methyltransferase 3 (.1) AT5G14220 49 / 1e-05 HEMG2, MEE61, PPO2 MATERNAL EFFECT EMBRYO ARREST 61, Flavin containing amine oxidoreductase family (.1.2) AT1G65840 47 / 3e-05 ATPAO4 polyamine oxidase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G170300 [exp] 1687 / 0 AT3G23510 1408 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067567 [exp] 731 / 0 AT3G23510 640 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067800 [exp] 729 / 0 AT3G23510 650 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067700 [exp] 719 / 0 AT3G23530 652 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067600 [exp] 713 / 0 AT3G23510 647 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.018G060000 [exp] 91 / 3e-19 AT4G33110 585 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.013G077000 [exp] 56 / 5e-08 AT1G64970 441 / 8e-156 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Potri.003G210701 [exp] 50 / 1e-05 AT1G20480 91 / 3e-18 AMP-dependent synthetase and ligase family protein (.1) Potri.T085701 [exp] 50 / 1e-05 AT1G20480 91 / 3e-18 AMP-dependent synthetase and ligase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023741 [exp] 1355 / 0 AT3G23530 1294 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Lus10011784 [exp] 1314 / 0 AT3G23530 1253 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Lus10014230 [exp] 84 / 7e-17 AT4G33110 508 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10022684 [exp] 76 / 2e-14 AT4G33110 516 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10021967 [exp] 47 / 6e-05 AT4G14210 952 / 0.0 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) Lus10002549 [exp] 47 / 9e-05 AT4G05160 74 / 5e-13 AMP-dependent synthetase and ligase family protein (.1) Lus10041260 [exp] 46 / 0.0002 AT4G14210 951 / 0.0 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) Lus10027378 [exp] 45 / 0.0002 AT3G23510 51 / 2e-06 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Lus10039599 [exp] 45 / 0.0003 AT5G13700 693 / 0.0 polyamine oxidase 1 (.1) Lus10023995 [exp] 44 / 0.0003 AT1G20330 459 / 9e-164 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13450 [poplar] [flax] NAD_binding_8 NAD(P)-binding Rossmann-like domain CL0063 [poplar] [flax] NADP_Rossmann PF13847 [poplar] [flax] Methyltransf_31 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.010G067900.1 pacid=42798374 polypeptide=Potri.010G067900.1.p locus=Potri.010G067900 ID=Potri.010G067900.1.v4.1 annot-version=v4.1 ATGTCAAGAATGAGAGTAGCAGTGGTTGGTGCTGGGATTAGTGGACTTGTTTCAGCTTATGTTCTTGCAAAAGCGGGTGCTGAGGTTGTTCTGTACGAGA AAGAAGACTCCTTGGGCGGCCATGCTAAAACTGTCTGCTTCGATGGTGTTGATTTAGACCTCGGTTTCATGGTCTTCAATCGGGTAACGTATCCAAATAT GATGGAGTTCTTCGAGAACCTTGGGATAGACATGGAGTTATCAGATATGTCGTTCTCAGTGAGCTTAGACCAGGGCAAGGGTTGTGAATGGGGAAGCAGA AATGGGTTTTCAGGTTTGTTTGCTCAGAAGAAGAATGCGTTAAATCCGTACTTTTGGAAAATGCTTCGAGAAATTGTCAAGTTTAAGGATGATGTGCTCA GTTATCTTGAGGTTCTTGAGAATGACCCAGTTGTTGATAGGAATGAAACCTTAGGGCAATTCGTCAAGTCACGAGGTTACTCTGAATTATTTCAGAAGGC TTATCTTGTTCCTGTTTGTGGTTCTATATGGTCCTGCCCTTCAGAAGGAGTTATGAACTTTTCAGCTTTCTCTGTACTCTCATTTTGCCGTAATCATCAT TTACTTCAGCTCTTTGGCCGGCCTCAGTGGCTCACAGTCAGACGGCGATCTCATTCTTATGTCAACAAGGTCAGAGAAAAGCTGGAAAGTTGGGGTTGCC AAATACGAACCGGTTGTGAGGTACAGGCTGTTTCAACAACAGATGAGGCAGGTTGTGCAGTACTCTGCAGAGATGGCTTGCTAGAAATGTACAGTGGTTG CATAATGGCTGTCCATGCCCCAGATGCTCTGGGATTATTAGGGGAGCAAGCAACATTTGATGAGACGAGAATACTTGGTGCTTTCCAATATATGTATAGC GAAATCTTCCTTCACCGTGATAAAACATATATGCCCCAAAACTCAGCAGCATGGAGTGCTTGGAATTTCTTGGGAAGTACAGAGAATAAAGTCTGTCTGA CATATTGGCTGAATGTGCTTCAGAATATTGATGAAACAGGTCTACCTTTTCTTGTGACGCTTAATCCAGATAATGCACCAGATCATACCTTACTCAAGTG GTCGACTGGTCGTCCAGTTCCATCTGTAGCTGCAACAAAAGCTTCACTTGAACTTGACCATATTCAAGGCAAGAGGAGAATTTGGTTTGGTGGAGCCTAC CAGGGTTATGGCTTCTATGAAGATGGACTAAAGTCTGGCATGGTTGCTGCACATGGTTTGCTTGGAAAAAGCTGTGACATTCTGAGGAATCCAAAACATA TGGTACCTTCTATGTTAGAAACTGGGGCGCGCCTTTTTGTTACTAGATTTCTTGGACATCATATCTCTACTGGCTGTTTAACTTTGCTGGAGGATGGAGG CACAGTTTTCTCCTTTGAGGGAACTTCTAAAAAATGTTCTCTGAAAACTGTTTTGAAGGTTCACAATCCGCAGTTTTACTGGAAGATAATGACACAGGCT GATTTAGGCCTCGCAGATGCATATATCAATGGTGATTTTTCCTTTGTTGACAAAGATGAAGGTCTTATAAACCTTTTCATGATTCTCATTGTAAATAGAG ATGCTGATAATTCTACATCTAAGTTGAACAAGAAAAGGGGCTGGTGGACACCATTATTATTCACAGCTGGTATTGCATCTGCAAAATTTTTCATTCAGCA TGTTTCAAGGCAAAATACTCTTACACAAGCTCGCAGAAATATCTCTCGTCATTATGACCTGAGTAATGAACTTTTTGCTCTGTTCTTGGATGAAACAATG ACATACTCCTGCGCGCTATTTAAGAAAGAAGATGAAGACTTGAAAGCTGCACAGATTAGAAAAATATCCCTTCTAATCGAAAAGGCTAGAGTCAATAAAG ACCATGAAGTTCTTGAGATTGGTTGTGGCTGGGGAACCTTAGCTATTGAAGTTGTCCAACGAACTGGATGTAAATATACTGGCATCACTCTATCTGAGGA GCAACTAAAATATGCAGAATTGAAAGTGAAGGAAGCGGGCCTCCAGGACAGTATAAAATTTCACCTCTGCGATTATCGCCAATTGCCCAAGACCCACAAA TATGACACGATAATATCATGTGAAATGATAGAAGCTGTTGGCCACGAATACATGGAAGAGTTTTTTGGTTGCTGCGAATCAGTATTGGCTGAAAATGGGC TTTTTGTCCTACAGTTCATATCAATCCCGGAAGAAAGATATGACGAGTACAGGAAGAGTTCAGATTTTATTAAGGAATATATATTTCCTGGTGGATGCTT GCCTTCATTAACTAGGATAACATCAGCCATGGCCTCTTCATCAAGACTCTGTGTGGAGCACGTGGAAAATATCGGAATTCAATACTATCAAACACTTAGA TACTGGAGAAAAAACTTCTTGGAGAATCAGAGAGAAATTCTTTCCCTGGGATTCAATGAAAAGTTCATTCGAACATGGGAGTACTATTTTGACTATTGTG CAGCTGGTTTCAAGACACACACACTTGGAAATTATCAGGTTGTATTTTCACGTCCTGGAAATGTTGTTGCACTAAGCAATCCATACAGAGGTTTCCCTTC AGCATACTGA
AA sequence Show only first row Show all	>Potri.010G067900.1 pacid=42798374 polypeptide=Potri.010G067900.1.p locus=Potri.010G067900 ID=Potri.010G067900.1.v4.1 annot-version=v4.1 MSRMRVAVVGAGISGLVSAYVLAKAGAEVVLYEKEDSLGGHAKTVCFDGVDLDLGFMVFNRVTYPNMMEFFENLGIDMELSDMSFSVSLDQGKGCEWGSR NGFSGLFAQKKNALNPYFWKMLREIVKFKDDVLSYLEVLENDPVVDRNETLGQFVKSRGYSELFQKAYLVPVCGSIWSCPSEGVMNFSAFSVLSFCRNHH LLQLFGRPQWLTVRRRSHSYVNKVREKLESWGCQIRTGCEVQAVSTTDEAGCAVLCRDGLLEMYSGCIMAVHAPDALGLLGEQATFDETRILGAFQYMYS EIFLHRDKTYMPQNSAAWSAWNFLGSTENKVCLTYWLNVLQNIDETGLPFLVTLNPDNAPDHTLLKWSTGRPVPSVAATKASLELDHIQGKRRIWFGGAY QGYGFYEDGLKSGMVAAHGLLGKSCDILRNPKHMVPSMLETGARLFVTRFLGHHISTGCLTLLEDGGTVFSFEGTSKKCSLKTVLKVHNPQFYWKIMTQA DLGLADAYINGDFSFVDKDEGLINLFMILIVNRDADNSTSKLNKKRGWWTPLLFTAGIASAKFFIQHVSRQNTLTQARRNISRHYDLSNELFALFLDETM TYSCALFKKEDEDLKAAQIRKISLLIEKARVNKDHEVLEIGCGWGTLAIEVVQRTGCKYTGITLSEEQLKYAELKVKEAGLQDSIKFHLCDYRQLPKTHK YDTIISCEMIEAVGHEYMEEFFGCCESVLAENGLFVLQFISIPEERYDEYRKSSDFIKEYIFPGGCLPSLTRITSAMASSSRLCVEHVENIGIQYYQTLR YWRKNFLENQREILSLGFNEKFIRTWEYYFDYCAAGFKTHTLGNYQVVFSRPGNVVALSNPYRGFPSAY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23530			Cyclopropane-fatty-acyl-phosph...		Potri.010G067900 [exp]	0	1
AT4G32770		ATSDX1, VTE1	tocopherol cyclase, chloroplas...		Potri.006G240100 [exp]	4.47	0.8224
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Potri.012G087100 [exp]	4.69	0.7628
					Potri.005G156500 [exp]	9.79	0.7945
AT5G60690	HD	IFL1, REV	REVOLUTA, INTERFASCICULAR FIBE...		Potri.004G211300 [exp]	12.96	0.7469	Pt-HB1.7
AT4G36980			unknown protein		Potri.007G044100 [exp]	13.85	0.7993
AT5G05660		EBI, ATNFXL2	NFX1-like 2, EARLY BIRD, Arabi...		Potri.008G068500 [exp]	15.16	0.7884
AT2G16365			F-box family protein (.1.2.3.4...		Potri.004G157000 [exp]	15.29	0.7918
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Potri.005G053900 [exp]	16.43	0.7305
AT1G45150			unknown protein		Potri.014G180700 [exp]	18.70	0.7976
AT3G49430		SRP34A, SR34a, ...	Serine/Arginine-Rich Protein S...		Potri.012G021800 [exp]	19.62	0.7416

Compare expression of checked genes

Potri.010G067900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.