Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33420 1437 / 0 Protein of unknown function (DUF810) (.1) AT1G04470 1369 / 0 Protein of unknown function (DUF810) (.1) AT2G25800 664 / 0 Protein of unknown function (DUF810) (.1) AT2G20010 618 / 0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) AT5G06970 387 / 5e-117 Protein of unknown function (DUF810) (.1) AT4G11670 222 / 2e-59 Protein of unknown function (DUF810) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G170200 [exp] 1779 / 0 AT2G33420 1382 / 0.0 Protein of unknown function (DUF810) (.1) Potri.006G238200 [exp] 721 / 0 AT2G25800 1446 / 0.0 Protein of unknown function (DUF810) (.1) Potri.018G044200 [exp] 682 / 0 AT2G25800 1442 / 0.0 Protein of unknown function (DUF810) (.1) Potri.018G085900 [exp] 613 / 0 AT2G20010 1166 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Potri.001G030100 [exp] 387 / 3e-117 AT5G06970 1437 / 0.0 Protein of unknown function (DUF810) (.1) Potri.001G108400 [exp] 269 / 7e-75 AT4G11670 1097 / 0.0 Protein of unknown function (DUF810) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023742 [exp] 1457 / 0 AT2G33420 1426 / 0.0 Protein of unknown function (DUF810) (.1) Lus10011785 [exp] 1303 / 0 AT2G33420 1256 / 0.0 Protein of unknown function (DUF810) (.1) Lus10034947 [exp] 640 / 0 AT2G20010 1236 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Lus10008431 [exp] 379 / 4e-120 AT2G25800 860 / 0.0 Protein of unknown function (DUF810) (.1) Lus10026160 [exp] 383 / 1e-115 AT5G06970 1507 / 0.0 Protein of unknown function (DUF810) (.1) Lus10008663 [exp] 355 / 6e-105 AT5G06970 1449 / 0.0 Protein of unknown function (DUF810) (.1) Lus10013391 [exp] 334 / 2e-103 AT2G25800 756 / 0.0 Protein of unknown function (DUF810) (.1) Lus10012970 [exp] 307 / 5e-94 AT2G20010 568 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Lus10008430 [exp] 306 / 6e-94 AT2G25800 587 / 0.0 Protein of unknown function (DUF810) (.1) Lus10013392 [exp] 304 / 4e-93 AT2G25800 589 / 0.0 Protein of unknown function (DUF810) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05664 [poplar] [flax] UNC_13_homolog Unc-13 homolog
Representative CDS sequence Show only first row Show all	>Potri.010G068000.2 pacid=42798419 polypeptide=Potri.010G068000.2.p locus=Potri.010G068000 ID=Potri.010G068000.2.v4.1 annot-version=v4.1 ATGGCCCAACAGAGTCGCCGCGAATCCTTCTCTGGTACCCTAACGATCTCCAGCTCCATTGACCCCGAGGACAATGATCTCTCTTGGCCTTTTGGAGACC TTGAAGGCCTTGACAAGGATGATGTCAGTGAGACCGCCTATGAGGTCTTCTTCACCGCCTGCCGCTCCTCCCCTGGCTTCGGAGGTGGCCGCAATGCCAT CAACTTTTATTCCAGCCATCAGCACCAACAACATGATGGCGATGGAGCAGGAACTGGCTCACCGAGTGGTCGGATGGGCGGTGGTCCGGTGGTGGTGATG TCTCCGACGAGTCGGATAAAGCGAGCTCTGGGAATGAAGATGCTGAAGAAGTCCCCTACAAGGAGGATGTCGGCTGTTGGAGGCGGCGGAGGCGGGTCGG CACCAGTATCACCGACTGGCCCTCTAAATCATGGAGGGACAAGTCCTGCCATGGGGTTTGCCACGGTTCCGATTTCTGGGAGGCCTCGGAGGCCGCTGAC TTCCGCGGAGATAATGAGGGCGCAGATGAGAGTGACGGAGCATAGTGATAATAGGTTGAGGAAGACGATCATGAGGACTCTTGTAGGCCAAGTACGTACT GCTACTATGGGCAGGCGAGCAGAGACAATAATCCTGCCATTGGAACTCCTCCGCCACCTAAAACCGTCAGAATTTAATGACAGTCAGGAGTACCATCTCT GGCAAAGGCGTCAGCTCAAAATCCTGGAGGCTGGCCTCCTCCTTCACCCTTCAATCCCGCTTGATAAATCAAGCCCTTATGCTATACGTCTTCGTGAAAT TATCCGTGCCAGCGAAACCAAACCTATCGACACAGGCAAAAATTCTGACACGATGAGAACCTTATGCAACAGTGTTGTTTCCTTGTCTTGGCGAAGTGCC AATGGTACACCAACCGATGTATGCCACTGGGCTGATGGATTTCCACTCAACATTCACCTATACGTTTCTCTTCTTCAATCAATATTTGATTTTAGGGATG AGACGTTAGTCCTTGATGAGGTTGACGAGCTTGTTGAGTTAATGAAAAAGACATGGTCTACACTGGGAATCAATAGACCTATACACAATCTGTGCTTTGC TTGGGTGCTTTTCCAGCAATACGTACTTACTTCACAAGTAGAGCCGGATCTTCTTTCTGCGACACATGCTATGTTATCGACAGAGGTGGCTAATGATGCG AAGAAGCCAGACCGAGAGGCTATGTATGTGAAGCTTTTGTCTTCTATGTTGGCTTCAATGCAAGGGTGGGCAGAGAGGAGATTGCTTCACTACCATGACC ATTTCCAGAGGGGAAATTTTGTCCTAATTGAGAATCTTTTACCTTTAGCATTATCAGCGTCAAAAATTTTGGGAGAAGACGTTACTATCGCAGAAGGGAT TGGGAAAGAGAAAGGAGACACACAGATAGTTGATTCATCTGGGGATCGTGTGGATCACTATATTCGAGGTTCTATAAAGAATGCATTTGCAAAGATAATA GAAACTGGAAGCTATAAGAGTACAAGTCTGGAAGTGAAAGATGAAGCAAGCGAGGCTCTCCTGCAGTTGGCTAAAGAAGCTGAGGACTTGGCCTTGAGAG AAAGGGAGGTTTTTAGTCCCATACTAAAGAAATGGCACTCAATTGCAGCTAGCATTGCTGCCGTAACGCTACACCAGTGCTATGGAGCAGTTTTGAAGCA ATATCTTGCTGGGGTGTCGACCCTCAATAATGAGACTGTTTCGGTACTGCAGAGTGCTGGAAAACTTGAAAAGGTTTTGGTTCAAATGCTGGTTGAAGAC TCTGCAGAGTGTGAAGACGGAGGCAAAACAATCGTACGAGAGATGGTTCCATACGAAGTTGATTCAGTCATACTGAGGCTTATGAAAAAATGGATTGGAG AGAGGTTGAAACGTGGGCAAGAATGCCTTAACCGTGCCAAAGATTCTGAAACATGGAATCCCAAGTCCAAAAACGAGCCACATGCGACATCAGCTGCGGA GTTAATAAAAATAGCCAAGGAAGCTGTGGATGATTTCTTTGAAATTCCTGTTGGAATTACCGATGATCTGATTAATGATCTAGCCGAAGGTTTTGAGAAT CTCTTCAAAGATTACTCCAACTTGGTAACAGCTTGTGGATCAAAACAGAGCTATGTTCCTACACTGCCTCCTCTAACCAGGTGCAATGGTGACTCAAAGT TCCTCAAAATGTGGAAGAGAGCTGCTCCTTGCACTATTAACTCAGAATATATGCACCAACATGGTTTAAATGATGCTCATCATCCCCGGCCGTCAACAAG CCGTGGAACACAACGGCTCTACATACGGCTCAACACTTTGTACTATCTTCAATCTCATCTCCACTCTCTAGAAAAGAACCTTGCTCTTGCCCCAAGAACC ACTGCGTCCCGTGGTTATCATCGCAGGAACCACATCAATTCCTCTTCCTACTTTGACCTAGCCCTTGCATCCATTCAATCTGCCTGTCATCATGTATCAG AAGTTGCTGCTTATCGTTTGATATTCCTCGACTCGAATTCTGTTTTTTATGATACTCTCTATGTTGCTGATGTAGCAAATGCAAGGATCAAGCCTGCACT GAGGATTCTCAAACAGAACCTTAATTTGTTGACAGCAATTCTCACTGACCGCGCCCAACCTGTTGCAATGAGAGAAGTCATGAAGGCCTCTTTTGAGGCC TTTCTCATGGTTTTGCTTGCTGGTGGCTGCAGCCGCATATTTTATCGATCTGATTATCCCATGATTGAGGAGGACTGTGAGAACTTGAAGCGCACATTTT GCACATGTGGTGAAGGATTGATGAACGAGGATGCAGTGGAAAAGGAGGCTGAGATTGTTGAAGGGGTGATAGCATTGATGGGTGATAGCACAGAACAACT AATGGAAGATTTTAGTATCCTGACTTGTGAAGCCAGTGGTATAGGATCTGCGGGTTCAGGTCAAAAACTACCAATGCCACCAACAACAGGAAGGTGGAAT AGGGCAGATCCAAACACAATACTACGGGTGTTATGCCACAGGGATGATAAAGCAGCAAATCAGTTCCTGAAGAAAACATTCCAGTTAGCAAAGAGAAGAT AA
AA sequence Show only first row Show all	>Potri.010G068000.2 pacid=42798419 polypeptide=Potri.010G068000.2.p locus=Potri.010G068000 ID=Potri.010G068000.2.v4.1 annot-version=v4.1 MAQQSRRESFSGTLTISSSIDPEDNDLSWPFGDLEGLDKDDVSETAYEVFFTACRSSPGFGGGRNAINFYSSHQHQQHDGDGAGTGSPSGRMGGGPVVVM SPTSRIKRALGMKMLKKSPTRRMSAVGGGGGGSAPVSPTGPLNHGGTSPAMGFATVPISGRPRRPLTSAEIMRAQMRVTEHSDNRLRKTIMRTLVGQVRT ATMGRRAETIILPLELLRHLKPSEFNDSQEYHLWQRRQLKILEAGLLLHPSIPLDKSSPYAIRLREIIRASETKPIDTGKNSDTMRTLCNSVVSLSWRSA NGTPTDVCHWADGFPLNIHLYVSLLQSIFDFRDETLVLDEVDELVELMKKTWSTLGINRPIHNLCFAWVLFQQYVLTSQVEPDLLSATHAMLSTEVANDA KKPDREAMYVKLLSSMLASMQGWAERRLLHYHDHFQRGNFVLIENLLPLALSASKILGEDVTIAEGIGKEKGDTQIVDSSGDRVDHYIRGSIKNAFAKII ETGSYKSTSLEVKDEASEALLQLAKEAEDLALREREVFSPILKKWHSIAASIAAVTLHQCYGAVLKQYLAGVSTLNNETVSVLQSAGKLEKVLVQMLVED SAECEDGGKTIVREMVPYEVDSVILRLMKKWIGERLKRGQECLNRAKDSETWNPKSKNEPHATSAAELIKIAKEAVDDFFEIPVGITDDLINDLAEGFEN LFKDYSNLVTACGSKQSYVPTLPPLTRCNGDSKFLKMWKRAAPCTINSEYMHQHGLNDAHHPRPSTSRGTQRLYIRLNTLYYLQSHLHSLEKNLALAPRT TASRGYHRRNHINSSSYFDLALASIQSACHHVSEVAAYRLIFLDSNSVFYDTLYVADVANARIKPALRILKQNLNLLTAILTDRAQPVAMREVMKASFEA FLMVLLAGGCSRIFYRSDYPMIEEDCENLKRTFCTCGEGLMNEDAVEKEAEIVEGVIALMGDSTEQLMEDFSILTCEASGIGSAGSGQKLPMPPTTGRWN RADPNTILRVLCHRDDKAANQFLKKTFQLAKRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33420			Protein of unknown function (D...		Potri.010G068000 [exp]	0	1
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Potri.006G097901 [exp]	12.48	0.8624
AT2G32540		ATCSLB4, ATCSLB...	CELLULOSE SYNTHASE LIKE B4, ce...		Potri.014G155300 [exp]	13.49	0.9259
					Potri.005G006300 [exp]	18.54	0.8496
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Potri.009G152300 [exp]	19.13	0.9218
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Potri.009G152200 [exp]	23.30	0.9213
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.012G138800 [exp]	30.82	0.9159	CHSL2
AT5G03620			Subtilisin-like serine endopep...		Potri.009G145600 [exp]	33.58	0.9157
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Potri.009G151900 [exp]	36.66	0.9156
AT3G23550			MATE efflux family protein (.1...		Potri.011G117400 [exp]	39.29	0.9149
AT4G24340			Phosphorylase superfamily prot...		Potri.019G050200 [exp]	41.56	0.9149

Compare expression of checked genes

Potri.010G068000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.